Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38234 * 120.41325 * 2 1 4 4 N 1.31853 * 120.79449 * 179.97438 * 3 2 1 5 5 C 1.31872 * 121.73929 * 0.02562 * 4 3 2 6 6 C 1.38304 * 120.74508 * 359.73992 * 5 4 3 7 7 Cl 1.73604 * 120.43346 * 180.28360 * 6 5 4 8 8 C 1.38611 * 120.41487 * 179.97438 * 2 1 3 9 9 C 1.50693 * 120.79304 * 0.02562 * 8 2 1 10 10 H 1.09007 * 109.47485 * 359.97438 * 9 8 2 11 11 C 1.52996 * 109.47605 * 119.99803 * 9 8 2 12 12 C 1.50702 * 109.47057 * 239.99667 * 9 8 2 13 13 H 1.08002 * 119.99621 * 354.26053 * 12 9 8 14 14 C 1.37875 * 120.00279 * 174.25902 * 12 9 8 15 15 N 1.31514 * 120.00083 * 158.31086 * 14 12 9 16 16 Si 1.86798 * 120.00140 * 338.31254 * 14 12 9 17 17 H 1.48497 * 109.47466 * 269.99973 * 16 14 12 18 18 H 1.48507 * 109.47162 * 30.00024 * 16 14 12 19 19 H 1.48501 * 109.47455 * 149.99686 * 16 14 12 20 20 H 1.08991 * 109.47424 * 270.02258 * 1 2 3 21 21 H 1.09008 * 109.47204 * 30.02538 * 1 2 3 22 22 H 1.09004 * 109.46889 * 150.01668 * 1 2 3 23 23 H 1.08006 * 119.60246 * 0.02562 * 3 2 1 24 24 H 1.08000 * 119.62809 * 180.02562 * 5 4 3 25 25 H 1.08998 * 109.47613 * 174.55006 * 11 9 8 26 26 H 1.09007 * 109.47138 * 294.54754 * 11 9 8 27 27 H 1.08992 * 109.47416 * 54.54577 * 11 9 8 28 28 H 0.96996 * 120.00318 * 354.93928 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1921 0.0000 4 7 3.5252 1.2009 0.0005 5 6 4.2264 0.0840 0.0005 6 6 3.5956 -1.1468 0.0054 7 17 4.5267 -2.6120 0.0128 8 6 2.2087 -1.1954 0.0005 9 6 1.4829 -2.5160 0.0005 10 1 0.4072 -2.3395 0.0006 11 6 1.8697 -3.3106 -1.2483 12 6 1.8631 -3.2981 1.2313 13 1 2.6288 -2.9231 1.8942 14 6 1.2336 -4.4924 1.5110 15 7 1.8133 -5.3731 2.2971 16 14 -0.4429 -4.8597 0.7735 17 1 -1.5046 -4.3712 1.6897 18 1 -0.5674 -4.1748 -0.5383 19 1 -0.5895 -6.3251 0.5826 20 1 -0.3634 0.0004 1.0276 21 1 -0.3634 0.8898 -0.5143 22 1 -0.3633 -0.8902 -0.5136 23 1 1.6670 2.1276 0.0004 24 1 5.3054 0.1310 0.0014 25 1 1.4216 -4.3031 -1.2008 26 1 1.5085 -2.7911 -2.1359 27 1 2.9545 -3.4038 -1.2982 28 1 2.7140 -5.2155 2.6209 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260429595.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = 16.104998 kcal Electronic energy + Delta-G solvation = -13576.169754 eV Core-core repulsion = 11231.653367 eV Total energy + Delta-G solvation = -2344.516387 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.96762 -36.02092 -35.15308 -32.76407 -31.58029 -29.66788 -26.93859 -24.83940 -23.41209 -21.72958 -19.81673 -17.69862 -16.45046 -15.78727 -15.08039 -14.19833 -13.89262 -13.34043 -13.10100 -12.84713 -12.58062 -12.28040 -12.13448 -11.56091 -11.25240 -11.00204 -10.84116 -10.59197 -10.42043 -9.77969 -9.70640 -9.14637 -8.90812 -8.57094 -8.32914 -8.12048 -6.46158 -4.04622 1.38921 1.73208 2.78734 3.38182 3.40366 3.55095 4.11006 4.48570 4.77085 5.10216 5.23123 5.29535 5.38501 5.44060 5.85859 5.91175 6.03285 6.27000 6.35229 6.42525 6.51611 6.67956 6.82662 7.01614 7.09939 7.43322 8.02309 8.22990 8.39248 8.89758 9.58726 10.91060 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.012654 C = 0.009889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.173995 B = 2212.242053 C = 2830.703401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 C 0.088 3.912 4 N -0.489 5.489 5 C 0.090 3.910 6 C -0.077 4.077 7 Cl -0.038 7.038 8 C 0.018 3.982 9 C 0.043 3.957 10 H 0.042 0.958 11 C -0.151 4.151 12 C -0.588 4.588 13 H 0.062 0.938 14 C 0.040 3.960 15 N -0.898 5.898 16 Si 1.034 2.966 17 H -0.286 1.286 18 H -0.275 1.275 19 H -0.286 1.286 20 H 0.074 0.926 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.152 0.848 24 H 0.154 0.846 25 H 0.051 0.949 26 H 0.019 0.981 27 H 0.062 0.938 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 8.712 -6.076 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.068 4.068 4 N -0.198 5.198 5 C -0.067 4.067 6 C -0.106 4.106 7 Cl -0.009 7.009 8 C 0.010 3.990 9 C 0.024 3.976 10 H 0.060 0.940 11 C -0.209 4.209 12 C -0.626 4.626 13 H 0.081 0.919 14 C -0.166 4.166 15 N -0.531 5.531 16 Si 0.861 3.139 17 H -0.213 1.213 18 H -0.200 1.200 19 H -0.212 1.212 20 H 0.092 0.908 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.169 0.831 24 H 0.171 0.829 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.931 8.257 -6.075 10.293 hybrid contribution 0.953 0.181 0.139 0.980 sum 0.023 8.438 -5.936 10.317 Atomic orbital electron populations 1.20742 0.90299 1.02678 1.02828 1.20822 0.97779 0.92893 1.02697 1.22547 0.89911 0.97290 0.97089 1.67683 1.08404 1.29686 1.14010 1.22571 1.00116 0.86286 0.97693 1.21925 0.93152 0.89030 1.06530 1.98348 1.71670 1.34635 1.96265 1.20660 0.91791 0.97337 0.89208 1.18400 0.95184 0.87521 0.96505 0.94036 1.22340 1.02639 0.99765 0.96119 1.21765 1.25256 1.07068 1.08488 0.91944 1.25597 1.03256 0.91869 0.95877 1.70793 1.15529 1.33730 1.33090 0.84178 0.76541 0.76410 0.76722 1.21251 1.20019 1.21231 0.90764 0.91842 0.90564 0.83104 0.82901 0.93047 0.96185 0.91919 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.45 36.00 0.34 -1.25 15 2 C -0.14 -2.47 5.90 -104.49 -0.62 -3.08 15 3 C 0.09 1.44 10.86 -17.54 -0.19 1.24 15 4 N -0.49 -8.58 10.36 -13.22 -0.14 -8.72 15 5 C 0.09 1.60 10.99 -17.51 -0.19 1.41 15 6 C -0.08 -1.53 5.93 -39.36 -0.23 -1.77 15 7 Cl -0.04 -0.77 23.76 -51.86 -1.23 -2.00 15 8 C 0.02 0.38 4.76 -104.29 -0.50 -0.12 15 9 C 0.04 0.97 1.75 -92.93 -0.16 0.81 15 10 H 0.04 0.92 4.01 -51.93 -0.21 0.71 15 11 C -0.15 -3.26 8.46 37.16 0.31 -2.94 15 12 C -0.59 -15.55 7.28 -34.44 -0.25 -15.81 15 13 H 0.06 1.81 7.26 -52.49 -0.38 1.43 15 14 C 0.04 1.10 5.23 -17.82 -0.09 1.01 15 15 N -0.90 -26.71 13.70 55.43 0.76 -25.95 15 16 Si 1.03 24.11 26.37 -169.99 -4.48 19.63 15 17 H -0.29 -6.47 7.11 56.52 0.40 -6.06 15 18 H -0.27 -5.85 5.94 56.52 0.34 -5.51 15 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 20 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 21 H 0.06 0.73 8.09 -51.92 -0.42 0.31 15 22 H 0.08 1.18 6.20 -51.93 -0.32 0.85 15 23 H 0.15 1.91 8.06 -52.48 -0.42 1.49 15 24 H 0.15 2.29 8.06 -52.49 -0.42 1.87 15 25 H 0.05 1.14 5.73 -51.93 -0.30 0.84 15 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 27 H 0.06 1.34 5.02 -51.93 -0.26 1.08 15 28 H 0.27 8.07 8.73 -40.82 -0.36 7.72 15 LS Contribution 242.40 15.07 3.65 3.65 Total: -1.00 -29.13 242.40 -5.82 -34.95 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -2.80 Total: -1.05 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.58 Total: -20.51 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.62 Total: -34.67 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.48 Total: 19.63 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.23 Total: -2.00 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.13 -5.82 -34.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429595.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.057 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds