Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38234 * 120.41325 * 2 1 4 4 N 1.31853 * 120.79449 * 179.97438 * 3 2 1 5 5 C 1.31872 * 121.73929 * 0.02562 * 4 3 2 6 6 C 1.38304 * 120.74508 * 359.73992 * 5 4 3 7 7 Cl 1.73604 * 120.43346 * 180.28360 * 6 5 4 8 8 C 1.38611 * 120.41487 * 179.97438 * 2 1 3 9 9 C 1.50693 * 120.79304 * 0.02562 * 8 2 1 10 10 H 1.09007 * 109.47485 * 359.97438 * 9 8 2 11 11 C 1.52996 * 109.47605 * 119.99803 * 9 8 2 12 12 C 1.50702 * 109.47057 * 239.99667 * 9 8 2 13 13 H 1.08002 * 119.99621 * 354.26053 * 12 9 8 14 14 C 1.37875 * 120.00279 * 174.25902 * 12 9 8 15 15 N 1.31514 * 120.00083 * 158.31086 * 14 12 9 16 16 Si 1.86798 * 120.00140 * 338.31254 * 14 12 9 17 17 H 1.48497 * 109.47466 * 269.99973 * 16 14 12 18 18 H 1.48507 * 109.47162 * 30.00024 * 16 14 12 19 19 H 1.48501 * 109.47455 * 149.99686 * 16 14 12 20 20 H 1.08991 * 109.47424 * 270.02258 * 1 2 3 21 21 H 1.09008 * 109.47204 * 30.02538 * 1 2 3 22 22 H 1.09004 * 109.46889 * 150.01668 * 1 2 3 23 23 H 1.08006 * 119.60246 * 0.02562 * 3 2 1 24 24 H 1.08000 * 119.62809 * 180.02562 * 5 4 3 25 25 H 1.08998 * 109.47613 * 174.55006 * 11 9 8 26 26 H 1.09007 * 109.47138 * 294.54754 * 11 9 8 27 27 H 1.08992 * 109.47416 * 54.54577 * 11 9 8 28 28 H 0.96996 * 120.00318 * 354.93928 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1921 0.0000 4 7 3.5252 1.2009 0.0005 5 6 4.2264 0.0840 0.0005 6 6 3.5956 -1.1468 0.0054 7 17 4.5267 -2.6120 0.0128 8 6 2.2087 -1.1954 0.0005 9 6 1.4829 -2.5160 0.0005 10 1 0.4072 -2.3395 0.0006 11 6 1.8697 -3.3106 -1.2483 12 6 1.8631 -3.2981 1.2313 13 1 2.6288 -2.9231 1.8942 14 6 1.2336 -4.4924 1.5110 15 7 1.8133 -5.3731 2.2971 16 14 -0.4429 -4.8597 0.7735 17 1 -1.5046 -4.3712 1.6897 18 1 -0.5674 -4.1748 -0.5383 19 1 -0.5895 -6.3251 0.5826 20 1 -0.3634 0.0004 1.0276 21 1 -0.3634 0.8898 -0.5143 22 1 -0.3633 -0.8902 -0.5136 23 1 1.6670 2.1276 0.0004 24 1 5.3054 0.1310 0.0014 25 1 1.4216 -4.3031 -1.2008 26 1 1.5085 -2.7911 -2.1359 27 1 2.9545 -3.4038 -1.2982 28 1 2.7140 -5.2155 2.6209 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429595.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = -1.811926 kcal Electronic energy + Delta-G solvation = -13576.946690 eV Core-core repulsion = 11231.653367 eV Total energy + Delta-G solvation = -2345.293324 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.36719 -37.56379 -36.80222 -34.45614 -33.21057 -31.26708 -28.19264 -26.75593 -25.00652 -23.11306 -21.48974 -19.65138 -17.96375 -17.25349 -16.48701 -15.73513 -15.58244 -15.01212 -14.58849 -14.39306 -14.10766 -13.69756 -13.56072 -13.09134 -12.83601 -12.65061 -12.49604 -12.31697 -12.02760 -11.51031 -11.42159 -11.03021 -10.45900 -10.23834 -10.03368 -9.70739 -8.62541 -6.20305 0.02421 0.27319 1.29215 1.51591 1.55768 1.72641 2.56442 2.73417 3.12999 3.51623 3.83289 3.84703 3.99949 4.20214 4.58204 4.60286 4.70051 4.82196 4.89481 4.94741 5.02457 5.20307 5.32330 5.38699 5.63069 5.75502 6.07984 6.16964 6.69560 6.87247 7.50393 8.72761 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.012654 C = 0.009889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.173995 B = 2212.242053 C = 2830.703401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.140 4.140 3 C 0.096 3.904 4 N -0.493 5.493 5 C 0.091 3.909 6 C -0.096 4.096 7 Cl -0.055 7.055 8 C -0.015 4.015 9 C 0.042 3.958 10 H 0.054 0.946 11 C -0.151 4.151 12 C -0.573 4.573 13 H 0.024 0.976 14 C -0.013 4.013 15 N -0.937 5.937 16 Si 1.071 2.929 17 H -0.273 1.273 18 H -0.240 1.240 19 H -0.294 1.294 20 H 0.076 0.924 21 H 0.102 0.898 22 H 0.068 0.932 23 H 0.194 0.806 24 H 0.174 0.826 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 10.960 -7.488 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.143 4.143 3 C -0.060 4.060 4 N -0.202 5.202 5 C -0.066 4.066 6 C -0.125 4.125 7 Cl -0.026 7.026 8 C -0.023 4.023 9 C 0.023 3.977 10 H 0.072 0.928 11 C -0.209 4.209 12 C -0.611 4.611 13 H 0.043 0.957 14 C -0.211 4.211 15 N -0.573 5.573 16 Si 0.893 3.107 17 H -0.198 1.198 18 H -0.163 1.163 19 H -0.221 1.221 20 H 0.095 0.905 21 H 0.121 0.879 22 H 0.087 0.913 23 H 0.211 0.789 24 H 0.191 0.809 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.537 10.537 -7.500 13.180 hybrid contribution 1.523 -0.378 0.593 1.677 sum -1.015 10.159 -6.906 12.326 Atomic orbital electron populations 1.20836 0.88055 1.04272 1.03428 1.21192 0.99466 0.92164 1.01437 1.23212 0.89516 0.98465 0.94840 1.67799 1.09273 1.29224 1.13907 1.22868 1.01237 0.85571 0.96904 1.22131 0.93235 0.89216 1.07915 1.98337 1.72035 1.35746 1.96444 1.20672 0.92256 0.97565 0.91788 1.18300 0.96109 0.88456 0.94800 0.92819 1.22281 1.02464 0.99370 0.96780 1.21834 1.23203 1.06999 1.09092 0.95719 1.26915 1.06260 0.92089 0.95853 1.70933 1.15057 1.35323 1.35985 0.83731 0.72794 0.76219 0.77965 1.19837 1.16316 1.22072 0.90516 0.87932 0.91333 0.78896 0.80862 0.94014 0.93523 0.92437 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 9.45 71.23 0.67 -2.08 15 2 C -0.14 -4.51 5.90 -19.78 -0.12 -4.63 15 3 C 0.10 2.75 10.86 84.69 0.92 3.66 15 4 N -0.49 -15.84 10.36 -195.75 -2.03 -17.87 15 5 C 0.09 3.06 10.99 84.70 0.93 3.99 15 6 C -0.10 -3.74 5.93 22.42 0.13 -3.61 15 7 Cl -0.05 -2.22 23.76 -2.72 -0.06 -2.29 15 8 C -0.01 -0.58 4.76 -19.65 -0.09 -0.67 15 9 C 0.04 1.86 1.75 -12.29 -0.02 1.83 15 10 H 0.05 2.24 4.01 -2.38 -0.01 2.23 15 11 C -0.15 -6.31 8.46 71.98 0.61 -5.70 15 12 C -0.57 -30.69 7.28 25.60 0.19 -30.50 15 13 H 0.02 1.48 7.26 -2.91 -0.02 1.45 15 14 C -0.01 -0.71 5.23 84.65 0.44 -0.27 15 15 N -0.94 -57.62 13.70 21.45 0.29 -57.33 15 16 Si 1.07 47.83 26.37 68.60 1.81 49.64 15 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 18 H -0.24 -9.26 5.94 99.48 0.59 -8.67 15 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 15 20 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.10 1.78 8.09 -2.38 -0.02 1.76 15 22 H 0.07 1.85 6.20 -2.38 -0.01 1.83 15 23 H 0.19 3.79 8.06 -2.91 -0.02 3.76 15 24 H 0.17 4.93 8.06 -2.91 -0.02 4.91 15 25 H 0.04 1.78 5.73 -2.39 -0.01 1.77 15 26 H 0.05 1.66 8.14 -2.38 -0.02 1.65 15 27 H 0.06 2.44 5.02 -2.39 -0.01 2.42 15 28 H 0.25 15.88 8.73 -92.71 -0.81 15.08 15 Total: -1.00 -64.01 242.40 4.69 -59.32 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.02 Total: 6.51 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.66 Total: -37.97 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.73 Total: -75.20 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.81 Total: 49.64 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.06 Total: -2.29 kcal Total: -64.01 4.69 -59.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429595.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.508 kcal (2) G-P(sol) polarization free energy of solvation -64.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds