Wall clock time and date at job start Mon Mar 30 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46805 * 2 1 4 4 C 1.50697 * 109.47369 * 239.99753 * 2 1 3 5 5 H 1.08002 * 120.00268 * 240.00744 * 4 2 1 6 6 C 1.37876 * 119.99925 * 60.00125 * 4 2 1 7 7 N 1.31520 * 119.99834 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00193 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47043 * 89.99549 * 8 6 4 10 10 H 1.48497 * 109.47222 * 209.99864 * 8 6 4 11 11 H 1.48503 * 109.46754 * 330.00119 * 8 6 4 12 12 C 1.50703 * 109.46567 * 119.99805 * 2 1 3 13 13 C 1.38133 * 119.97013 * 60.23637 * 12 2 1 14 14 C 1.38877 * 119.93329 * 180.26886 * 13 12 2 15 15 N 1.39744 * 120.06100 * 179.72000 * 14 13 12 16 16 C 1.38916 * 119.88157 * 359.74974 * 14 13 12 17 17 C 1.38091 * 119.93826 * 359.97438 * 16 14 13 18 18 C 1.38361 * 119.96494 * 239.99469 * 12 2 1 19 19 Cl 1.73599 * 119.94255 * 0.02562 * 18 12 2 20 20 H 1.09002 * 109.47259 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46929 * 300.00388 * 1 2 3 22 22 H 1.09003 * 109.46858 * 60.00207 * 1 2 3 23 23 H 0.97001 * 119.99536 * 179.97438 * 7 6 4 24 24 H 1.07995 * 120.03409 * 359.97438 * 13 12 2 25 25 H 0.96997 * 120.00471 * 180.02562 * 15 14 13 26 26 H 0.97007 * 119.99417 * 0.02736 * 15 14 13 27 27 H 1.07997 * 120.03042 * 179.97438 * 16 14 13 28 28 H 1.07994 * 119.97071 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4117 10 1 2.4867 -0.1415 -5.1122 11 1 3.6295 -1.7584 -3.7120 12 6 2.0323 -0.7104 1.2306 13 6 1.7021 -2.0343 1.4461 14 6 2.1607 -2.6866 2.5831 15 7 1.8235 -4.0242 2.8068 16 6 2.9547 -2.0068 3.4981 17 6 3.2864 -0.6851 3.2747 18 6 2.8277 -0.0373 2.1408 19 17 3.2453 1.6248 1.8640 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7089 1.1612 -3.4844 24 1 1.0841 -2.5602 0.7335 25 1 2.1439 -4.4788 3.6014 26 1 1.2689 -4.4979 2.1672 27 1 3.3123 -2.5116 4.3834 28 1 3.9033 -0.1560 3.9859 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260453461.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:31 Heat of formation + Delta-G solvation = 3.533703 kcal Electronic energy + Delta-G solvation = -13218.664447 eV Core-core repulsion = 10873.602927 eV Total energy + Delta-G solvation = -2345.061520 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.96509 -35.80390 -34.76225 -33.34227 -31.34361 -28.49659 -27.66150 -25.07970 -22.90632 -21.44940 -19.66769 -16.72022 -16.44930 -15.89377 -15.50641 -14.51991 -14.05167 -13.26841 -13.11602 -12.80281 -12.37552 -11.55085 -11.53718 -11.41609 -11.11940 -10.89593 -10.80074 -10.32002 -10.24602 -9.93860 -9.55514 -9.31829 -8.89097 -8.29267 -7.97283 -6.98891 -5.96068 -4.01937 1.99280 2.10397 3.07802 3.31961 3.38989 3.42995 4.18847 4.37250 4.51113 5.34591 5.40000 5.48968 5.93650 6.07097 6.25419 6.58048 6.75396 6.80268 6.91583 7.00196 7.19937 7.27089 7.43136 7.76787 7.83490 8.03791 8.05834 8.13789 8.43284 8.99878 9.61313 11.09806 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.010385 C = 0.008404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.946464 B = 2695.454181 C = 3330.932400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.060 3.940 3 H 0.055 0.945 4 C -0.503 4.503 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.023 3.977 13 C -0.176 4.176 14 C 0.209 3.791 15 N -0.883 5.883 16 C -0.215 4.215 17 C -0.070 4.070 18 C -0.096 4.096 19 Cl -0.085 7.085 20 H 0.026 0.974 21 H 0.008 0.992 22 H 0.086 0.914 23 H 0.260 0.740 24 H 0.128 0.872 25 H 0.392 0.608 26 H 0.396 0.604 27 H 0.116 0.884 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -5.364 9.994 11.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.042 3.958 3 H 0.073 0.927 4 C -0.541 4.541 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.021 3.979 13 C -0.199 4.199 14 C 0.106 3.894 15 N -0.422 5.422 16 C -0.237 4.237 17 C -0.090 4.090 18 C -0.125 4.125 19 Cl -0.056 7.056 20 H 0.045 0.955 21 H 0.027 0.973 22 H 0.105 0.895 23 H 0.070 0.930 24 H 0.145 0.855 25 H 0.219 0.781 26 H 0.224 0.776 27 H 0.134 0.866 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.751 -5.042 9.816 11.173 hybrid contribution 0.315 -0.755 -0.810 1.151 sum 2.066 -5.797 9.006 10.907 Atomic orbital electron populations 1.21767 0.97521 0.99107 1.00353 1.18106 0.92940 0.96808 0.87944 0.92719 1.21060 1.31103 1.12201 0.89763 0.92562 1.24930 0.95143 0.95000 0.98804 1.69893 1.36730 1.22813 1.23295 0.86605 0.79264 0.79392 0.82833 1.20773 1.21226 1.19937 1.20332 0.90168 0.92748 0.94629 1.20460 1.06760 0.95003 0.97634 1.17887 0.93200 0.84615 0.93718 1.42403 1.60868 1.10281 1.28688 1.20214 1.07017 0.95125 1.01388 1.20600 0.98721 0.93951 0.95679 1.20609 1.06674 0.86413 0.98765 1.98295 1.92647 1.18329 1.96358 0.95475 0.97253 0.89526 0.93008 0.85451 0.78091 0.77601 0.86643 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.79 37.16 0.33 -2.84 15 2 C 0.06 1.53 2.37 -92.92 -0.22 1.31 15 3 H 0.05 1.49 6.16 -51.93 -0.32 1.17 15 4 C -0.50 -13.77 8.24 -34.44 -0.28 -14.05 15 5 H 0.06 1.54 7.59 -52.49 -0.40 1.14 15 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 15 8 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 15 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 15 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 12 C 0.02 0.50 4.74 -104.61 -0.50 0.01 15 13 C -0.18 -3.48 8.55 -39.38 -0.34 -3.81 15 14 C 0.21 3.44 6.76 -83.76 -0.57 2.88 15 15 N -0.88 -10.82 9.09 32.42 0.29 -10.52 15 16 C -0.21 -3.36 9.90 -39.38 -0.39 -3.75 15 17 C -0.07 -1.19 9.82 -39.57 -0.39 -1.58 15 18 C -0.10 -1.95 6.32 -39.47 -0.25 -2.20 15 19 Cl -0.08 -1.69 26.99 -51.86 -1.40 -3.09 15 20 H 0.03 0.62 7.40 -51.93 -0.38 0.23 15 21 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 15 22 H 0.09 2.31 6.07 -51.93 -0.32 1.99 15 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 24 H 0.13 2.53 7.58 -52.49 -0.40 2.14 15 25 H 0.39 3.74 8.84 -40.82 -0.36 3.38 15 26 H 0.40 4.37 8.84 -40.82 -0.36 4.01 15 27 H 0.12 1.46 8.06 -52.49 -0.42 1.03 15 28 H 0.12 1.74 8.06 -52.49 -0.42 1.31 15 LS Contribution 254.08 15.07 3.83 3.83 Total: -1.00 -29.18 254.08 -7.31 -36.49 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -2.94 Total: 4.10 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -2.70 Total: -22.43 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.92 Total: -35.23 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -1.40 Total: -3.09 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.18 -7.31 -36.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260453461.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.025 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds