Wall clock time and date at job start Mon Mar 30 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46805 * 2 1 4 4 C 1.50697 * 109.47369 * 239.99753 * 2 1 3 5 5 H 1.08002 * 120.00268 * 240.00744 * 4 2 1 6 6 C 1.37876 * 119.99925 * 60.00125 * 4 2 1 7 7 N 1.31520 * 119.99834 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00193 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47043 * 89.99549 * 8 6 4 10 10 H 1.48497 * 109.47222 * 209.99864 * 8 6 4 11 11 H 1.48503 * 109.46754 * 330.00119 * 8 6 4 12 12 C 1.50703 * 109.46567 * 119.99805 * 2 1 3 13 13 C 1.38133 * 119.97013 * 60.23637 * 12 2 1 14 14 C 1.38877 * 119.93329 * 180.26886 * 13 12 2 15 15 N 1.39744 * 120.06100 * 179.72000 * 14 13 12 16 16 C 1.38916 * 119.88157 * 359.74974 * 14 13 12 17 17 C 1.38091 * 119.93826 * 359.97438 * 16 14 13 18 18 C 1.38361 * 119.96494 * 239.99469 * 12 2 1 19 19 Cl 1.73599 * 119.94255 * 0.02562 * 18 12 2 20 20 H 1.09002 * 109.47259 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46929 * 300.00388 * 1 2 3 22 22 H 1.09003 * 109.46858 * 60.00207 * 1 2 3 23 23 H 0.97001 * 119.99536 * 179.97438 * 7 6 4 24 24 H 1.07995 * 120.03409 * 359.97438 * 13 12 2 25 25 H 0.96997 * 120.00471 * 180.02562 * 15 14 13 26 26 H 0.97007 * 119.99417 * 0.02736 * 15 14 13 27 27 H 1.07997 * 120.03042 * 179.97438 * 16 14 13 28 28 H 1.07994 * 119.97071 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4117 10 1 2.4867 -0.1415 -5.1122 11 1 3.6295 -1.7584 -3.7120 12 6 2.0323 -0.7104 1.2306 13 6 1.7021 -2.0343 1.4461 14 6 2.1607 -2.6866 2.5831 15 7 1.8235 -4.0242 2.8068 16 6 2.9547 -2.0068 3.4981 17 6 3.2864 -0.6851 3.2747 18 6 2.8277 -0.0373 2.1408 19 17 3.2453 1.6248 1.8640 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7089 1.1612 -3.4844 24 1 1.0841 -2.5602 0.7335 25 1 2.1439 -4.4788 3.6014 26 1 1.2689 -4.4979 2.1672 27 1 3.3123 -2.5116 4.3834 28 1 3.9033 -0.1560 3.9859 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260453461.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:31 Heat of formation + Delta-G solvation = -14.110525 kcal Electronic energy + Delta-G solvation = -13219.429558 eV Core-core repulsion = 10873.602927 eV Total energy + Delta-G solvation = -2345.826631 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.38032 -37.26132 -36.49936 -34.78890 -33.16842 -30.09850 -29.04526 -27.17238 -24.50584 -22.87848 -21.34519 -18.39969 -17.86892 -17.42836 -16.94903 -16.38580 -15.50519 -14.87512 -14.57104 -14.38261 -14.10284 -13.40472 -13.04580 -12.86822 -12.80295 -12.73285 -12.68474 -12.21344 -12.00162 -11.79549 -11.09370 -10.95672 -10.75287 -10.36721 -9.50060 -8.26482 -8.04836 -6.17842 0.60441 0.67425 1.41778 1.43231 1.53183 1.60869 2.45393 2.99872 3.10491 3.22996 4.09292 4.16365 4.51908 4.70116 4.82934 4.94277 5.00875 5.26373 5.33726 5.42509 5.43738 5.57455 5.66998 5.93335 6.10549 6.13110 6.40095 6.65341 6.90202 7.11490 7.48337 8.99574 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.010385 C = 0.008404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.946464 B = 2695.454181 C = 3330.932400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.060 3.940 3 H 0.028 0.972 4 C -0.514 4.514 5 H 0.049 0.951 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.272 1.272 12 C -0.007 4.007 13 C -0.196 4.196 14 C 0.220 3.780 15 N -0.864 5.864 16 C -0.204 4.204 17 C -0.063 4.063 18 C -0.122 4.122 19 Cl -0.095 7.095 20 H 0.031 0.969 21 H 0.019 0.981 22 H 0.059 0.941 23 H 0.260 0.740 24 H 0.116 0.884 25 H 0.410 0.590 26 H 0.404 0.596 27 H 0.158 0.842 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -7.325 11.542 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.042 3.958 3 H 0.046 0.954 4 C -0.552 4.552 5 H 0.067 0.933 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.197 1.197 12 C -0.008 4.008 13 C -0.219 4.219 14 C 0.114 3.886 15 N -0.404 5.404 16 C -0.226 4.226 17 C -0.082 4.082 18 C -0.150 4.150 19 Cl -0.067 7.067 20 H 0.050 0.950 21 H 0.038 0.962 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.134 0.866 25 H 0.240 0.760 26 H 0.233 0.767 27 H 0.175 0.825 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.562 -7.049 11.386 13.634 hybrid contribution 0.063 -0.226 -1.185 1.208 sum 2.625 -7.275 10.201 12.802 Atomic orbital electron populations 1.21601 0.97551 0.99051 0.99461 1.17918 0.93016 0.95593 0.89288 0.95423 1.21320 1.30838 1.12023 0.91066 0.93285 1.25677 0.95407 0.95718 1.01613 1.70024 1.37737 1.24039 1.23822 0.85649 0.78818 0.78417 0.79337 1.19855 1.21009 1.19682 1.20085 0.92460 0.93937 0.94356 1.20373 1.07893 0.94474 0.99155 1.17901 0.92204 0.86024 0.92464 1.42359 1.59945 1.08681 1.29419 1.20669 1.05396 0.94502 1.02052 1.20941 0.97974 0.94574 0.94681 1.20775 1.07906 0.86286 1.00058 1.98280 1.92717 1.19171 1.96530 0.94980 0.96162 0.92183 0.93043 0.86619 0.75964 0.76718 0.82457 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.79 71.98 0.63 -5.35 15 2 C 0.06 3.14 2.37 -12.28 -0.03 3.11 15 3 H 0.03 1.57 6.16 -2.39 -0.01 1.55 15 4 C -0.51 -28.77 8.24 25.60 0.21 -28.56 15 5 H 0.05 2.74 7.59 -2.91 -0.02 2.72 15 6 C 0.01 0.80 5.30 84.65 0.45 1.24 15 7 N -0.92 -53.62 11.32 21.45 0.24 -53.38 15 8 Si 0.95 44.22 29.54 68.60 2.03 46.25 15 9 H -0.27 -12.21 7.11 99.48 0.71 -11.51 15 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 12 C -0.01 -0.31 4.74 -19.86 -0.09 -0.40 15 13 C -0.20 -7.59 8.55 22.40 0.19 -7.40 15 14 C 0.22 6.58 6.76 38.20 0.26 6.84 15 15 N -0.86 -17.88 9.09 -51.34 -0.47 -18.34 15 16 C -0.20 -5.52 9.90 22.40 0.22 -5.30 15 17 C -0.06 -1.95 9.82 22.28 0.22 -1.73 15 18 C -0.12 -4.86 6.32 22.34 0.14 -4.72 15 19 Cl -0.10 -3.82 26.99 -2.72 -0.07 -3.90 15 20 H 0.03 1.51 7.40 -2.39 -0.02 1.49 15 21 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 22 H 0.06 3.31 6.07 -2.39 -0.01 3.30 15 23 H 0.26 14.49 8.31 -92.71 -0.77 13.72 15 24 H 0.12 4.62 7.58 -2.91 -0.02 4.60 15 25 H 0.41 5.85 8.84 -92.71 -0.82 5.03 15 26 H 0.40 7.62 8.84 -92.70 -0.82 6.80 15 27 H 0.16 2.98 8.06 -2.91 -0.02 2.95 15 28 H 0.15 3.73 8.06 -2.91 -0.02 3.70 15 Total: -1.00 -63.88 254.08 3.48 -60.39 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -0.45 Total: 11.23 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 2.20 Total: -42.26 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -0.22 Total: -71.72 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 17 Polarization: -3.82 SS G_CDS: -0.07 Total: -3.90 kcal Total: -63.88 3.48 -60.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260453461.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.284 kcal (2) G-P(sol) polarization free energy of solvation -63.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds