Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47064 * 2 1 4 4 C 1.50701 * 109.46822 * 239.99990 * 2 1 3 5 5 H 1.07998 * 119.99852 * 240.00370 * 4 2 1 6 6 C 1.37878 * 120.00012 * 60.00554 * 4 2 1 7 7 N 1.31513 * 120.00013 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99889 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47595 * 59.99579 * 8 6 4 10 10 H 1.48504 * 109.46914 * 179.97438 * 8 6 4 11 11 H 1.48509 * 109.46913 * 299.99380 * 8 6 4 12 12 C 1.50701 * 109.46752 * 120.00571 * 2 1 3 13 13 C 1.38134 * 119.95047 * 240.25273 * 12 2 1 14 14 C 1.38904 * 119.95107 * 180.25176 * 13 12 2 15 15 N 1.39666 * 120.07015 * 179.76271 * 14 13 12 16 16 C 1.38913 * 119.85826 * 359.74960 * 14 13 12 17 17 C 1.38191 * 119.91429 * 359.97438 * 16 14 13 18 18 Cl 1.73607 * 119.97355 * 180.02562 * 17 16 14 19 19 C 1.38235 * 119.96011 * 59.99408 * 12 2 1 20 20 H 1.09002 * 109.46677 * 299.99835 * 1 2 3 21 21 H 1.09001 * 109.46775 * 59.99866 * 1 2 3 22 22 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 23 23 H 0.96998 * 119.99751 * 180.02562 * 7 6 4 24 24 H 1.08001 * 120.02913 * 359.97438 * 13 12 2 25 25 H 0.97001 * 120.00280 * 179.97438 * 15 14 13 26 26 H 0.97000 * 120.00444 * 359.97438 * 15 14 13 27 27 H 1.08004 * 120.04128 * 180.02562 * 16 14 13 28 28 H 1.08002 * 119.93474 * 0.02847 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8257 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 6 2.0323 -0.7106 1.2304 13 6 2.8221 -0.0369 2.1418 14 6 3.2893 -0.6933 3.2732 15 7 4.0921 -0.0159 4.1938 16 6 2.9563 -2.0248 3.4873 17 6 2.1611 -2.6916 2.5748 18 17 1.7433 -4.3555 2.8412 19 6 1.6977 -2.0340 1.4483 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7083 1.1610 -3.4844 24 1 3.0798 0.9982 1.9725 25 1 4.4176 -0.4752 4.9838 26 1 4.3242 0.9138 4.0432 27 1 3.3176 -2.5379 4.3663 28 1 1.0770 -2.5572 0.7360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260472007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = 0.499712 kcal Electronic energy + Delta-G solvation = -13030.676018 eV Core-core repulsion = 10685.482934 eV Total energy + Delta-G solvation = -2345.193083 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.99675 -36.11956 -35.13280 -33.19687 -31.18985 -28.81697 -27.66689 -25.11984 -22.63396 -21.80929 -19.65165 -16.76285 -16.43104 -16.01181 -15.29109 -14.56003 -14.02108 -13.76793 -13.22282 -12.86872 -12.39167 -11.65803 -11.57739 -11.26858 -11.07824 -10.90557 -10.86297 -10.59573 -10.38494 -10.07956 -9.64669 -9.45835 -8.97616 -8.37175 -7.93198 -7.11869 -6.01069 -4.07664 1.86753 2.16995 2.60347 3.33283 3.37287 3.41121 4.16091 4.35804 4.49652 5.30141 5.43880 5.70379 5.85894 6.15778 6.17149 6.45499 6.67401 6.83134 6.95871 7.01545 7.17411 7.32147 7.39526 7.70958 7.82111 7.95634 7.99627 8.09237 8.38428 8.94677 9.56971 11.04660 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.008461 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.031157 B = 3308.591312 C = 3818.685339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.071 3.929 3 H 0.037 0.963 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.025 3.975 13 C -0.200 4.200 14 C 0.218 3.782 15 N -0.882 5.882 16 C -0.218 4.218 17 C 0.011 3.989 18 Cl -0.094 7.094 19 C -0.153 4.153 20 H 0.009 0.991 21 H 0.086 0.914 22 H 0.030 0.970 23 H 0.261 0.739 24 H 0.119 0.881 25 H 0.393 0.607 26 H 0.396 0.604 27 H 0.118 0.882 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 -3.055 10.897 11.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.055 0.945 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.024 3.976 13 C -0.223 4.223 14 C 0.115 3.885 15 N -0.422 5.422 16 C -0.242 4.242 17 C -0.016 4.016 18 Cl -0.065 7.065 19 C -0.173 4.173 20 H 0.028 0.972 21 H 0.105 0.895 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.137 0.863 25 H 0.220 0.780 26 H 0.224 0.776 27 H 0.136 0.864 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.049 -3.113 10.737 11.587 hybrid contribution 0.581 -0.448 -0.552 0.918 sum 3.631 -3.560 10.185 11.384 Atomic orbital electron populations 1.21792 0.97356 0.99515 1.00346 1.17934 0.93048 0.95428 0.88330 0.94522 1.21065 1.31343 1.12444 0.89746 0.92351 1.24942 0.95005 0.94976 0.98927 1.69873 1.36588 1.22881 1.23555 0.86633 0.79238 0.79858 0.82168 1.20152 1.21311 1.20261 1.20391 0.90246 0.92458 0.94498 1.20685 1.05525 1.00636 0.95418 1.17528 0.90619 0.90692 0.89672 1.42334 1.58668 1.14940 1.26294 1.20056 1.07882 0.93911 1.02318 1.20586 0.99781 0.84354 0.96896 1.98315 1.92684 1.19059 1.96476 1.20785 1.04466 0.95279 0.96809 0.97181 0.89527 0.95076 0.92881 0.86296 0.78010 0.77560 0.86420 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.78 37.16 0.33 -2.83 15 2 C 0.07 1.75 2.48 -92.92 -0.23 1.52 15 3 H 0.04 0.96 7.87 -51.93 -0.41 0.55 15 4 C -0.51 -13.71 8.24 -34.44 -0.28 -13.99 15 5 H 0.06 1.58 7.60 -52.49 -0.40 1.19 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 15 7 N -0.89 -24.94 11.32 55.43 0.63 -24.31 15 8 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 15 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 15 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 12 C 0.03 0.54 4.73 -104.66 -0.50 0.05 15 13 C -0.20 -3.77 9.52 -39.37 -0.37 -4.14 15 14 C 0.22 3.54 6.75 -83.79 -0.57 2.98 15 15 N -0.88 -10.47 9.09 32.41 0.29 -10.17 15 16 C -0.22 -3.58 9.68 -39.35 -0.38 -3.96 15 17 C 0.01 0.19 6.32 -39.53 -0.25 -0.05 15 18 Cl -0.09 -1.51 28.95 -51.86 -1.50 -3.01 15 19 C -0.15 -3.14 8.49 -39.51 -0.34 -3.47 15 20 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 15 21 H 0.09 2.26 6.07 -51.93 -0.32 1.94 15 22 H 0.03 0.71 7.38 -51.93 -0.38 0.33 15 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 24 H 0.12 2.11 7.94 -52.49 -0.42 1.69 15 25 H 0.39 3.72 8.84 -40.82 -0.36 3.36 15 26 H 0.40 4.05 8.84 -40.82 -0.36 3.69 15 27 H 0.12 1.66 8.06 -52.48 -0.42 1.23 15 28 H 0.13 2.76 7.57 -52.49 -0.40 2.36 15 LS Contribution 257.14 15.07 3.87 3.87 Total: -1.00 -28.12 257.14 -7.43 -35.55 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.02 Total: 4.23 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -2.68 Total: -22.30 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.92 Total: -34.49 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -1.50 Total: -3.01 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.12 -7.43 -35.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.048 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds