Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47064 * 2 1 4 4 C 1.50701 * 109.46822 * 239.99990 * 2 1 3 5 5 H 1.07998 * 119.99852 * 240.00370 * 4 2 1 6 6 C 1.37878 * 120.00012 * 60.00554 * 4 2 1 7 7 N 1.31513 * 120.00013 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99889 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47595 * 59.99579 * 8 6 4 10 10 H 1.48504 * 109.46914 * 179.97438 * 8 6 4 11 11 H 1.48509 * 109.46913 * 299.99380 * 8 6 4 12 12 C 1.50701 * 109.46752 * 120.00571 * 2 1 3 13 13 C 1.38134 * 119.95047 * 240.25273 * 12 2 1 14 14 C 1.38904 * 119.95107 * 180.25176 * 13 12 2 15 15 N 1.39666 * 120.07015 * 179.76271 * 14 13 12 16 16 C 1.38913 * 119.85826 * 359.74960 * 14 13 12 17 17 C 1.38191 * 119.91429 * 359.97438 * 16 14 13 18 18 Cl 1.73607 * 119.97355 * 180.02562 * 17 16 14 19 19 C 1.38235 * 119.96011 * 59.99408 * 12 2 1 20 20 H 1.09002 * 109.46677 * 299.99835 * 1 2 3 21 21 H 1.09001 * 109.46775 * 59.99866 * 1 2 3 22 22 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 23 23 H 0.96998 * 119.99751 * 180.02562 * 7 6 4 24 24 H 1.08001 * 120.02913 * 359.97438 * 13 12 2 25 25 H 0.97001 * 120.00280 * 179.97438 * 15 14 13 26 26 H 0.97000 * 120.00444 * 359.97438 * 15 14 13 27 27 H 1.08004 * 120.04128 * 180.02562 * 16 14 13 28 28 H 1.08002 * 119.93474 * 0.02847 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8257 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 6 2.0323 -0.7106 1.2304 13 6 2.8221 -0.0369 2.1418 14 6 3.2893 -0.6933 3.2732 15 7 4.0921 -0.0159 4.1938 16 6 2.9563 -2.0248 3.4873 17 6 2.1611 -2.6916 2.5748 18 17 1.7433 -4.3555 2.8412 19 6 1.6977 -2.0340 1.4483 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7083 1.1610 -3.4844 24 1 3.0798 0.9982 1.9725 25 1 4.4176 -0.4752 4.9838 26 1 4.3242 0.9138 4.0432 27 1 3.3176 -2.5379 4.3663 28 1 1.0770 -2.5572 0.7360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260472007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = -15.831845 kcal Electronic energy + Delta-G solvation = -13031.384207 eV Core-core repulsion = 10685.482934 eV Total energy + Delta-G solvation = -2345.901273 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.42621 -37.46449 -36.75694 -34.77632 -32.95843 -30.37350 -29.10075 -27.18648 -24.30552 -23.21214 -21.31918 -18.41032 -17.80988 -17.61828 -16.74533 -16.43605 -15.46003 -15.10850 -14.79000 -14.50238 -14.18671 -13.46009 -12.98081 -12.92483 -12.79491 -12.77546 -12.48418 -12.24143 -12.03253 -11.94475 -11.24361 -11.19816 -10.79788 -10.44812 -9.43317 -8.38460 -8.07974 -6.21320 0.43098 0.73415 1.23502 1.43869 1.44887 1.52612 2.44777 2.95646 3.07731 3.20512 4.06896 4.28915 4.41601 4.69121 4.70960 4.91164 4.95932 5.17907 5.24863 5.34030 5.47637 5.54811 5.69906 5.88634 6.08695 6.11322 6.37500 6.62124 6.86363 7.08686 7.46113 8.96346 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.008461 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.031157 B = 3308.591312 C = 3818.685339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.071 3.929 3 H 0.011 0.989 4 C -0.522 4.522 5 H 0.050 0.950 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.002 3.998 13 C -0.214 4.214 14 C 0.233 3.767 15 N -0.861 5.861 16 C -0.212 4.212 17 C 0.011 3.989 18 Cl -0.076 7.076 19 C -0.175 4.175 20 H 0.026 0.974 21 H 0.061 0.939 22 H 0.030 0.970 23 H 0.262 0.738 24 H 0.123 0.877 25 H 0.409 0.591 26 H 0.407 0.593 27 H 0.149 0.851 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.406 -3.838 12.482 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.053 3.947 3 H 0.029 0.971 4 C -0.560 4.560 5 H 0.068 0.932 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.001 3.999 13 C -0.237 4.237 14 C 0.127 3.873 15 N -0.402 5.402 16 C -0.235 4.235 17 C -0.017 4.017 18 Cl -0.047 7.047 19 C -0.196 4.196 20 H 0.045 0.955 21 H 0.080 0.920 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.141 0.859 25 H 0.240 0.760 26 H 0.237 0.763 27 H 0.167 0.833 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.277 -3.884 12.362 13.645 hybrid contribution 0.249 -0.213 -0.916 0.973 sum 4.526 -4.097 11.445 12.972 Atomic orbital electron populations 1.21627 0.97277 0.99224 0.99820 1.17773 0.93225 0.94148 0.89561 0.97080 1.21331 1.31219 1.12298 0.91123 0.93179 1.25666 0.95248 0.95677 1.01617 1.69993 1.37452 1.23972 1.24077 0.85707 0.78773 0.78847 0.78936 1.19770 1.20766 1.19821 1.20084 0.92361 0.93137 0.94309 1.20708 1.05782 1.00987 0.96185 1.17487 0.89925 0.90704 0.89197 1.42283 1.56830 1.15430 1.25677 1.20385 1.06625 0.93882 1.02618 1.20626 0.99448 0.85286 0.96297 1.98318 1.92584 1.17502 1.96288 1.20588 1.05868 0.95166 0.98000 0.95511 0.92040 0.95132 0.92883 0.85927 0.76033 0.76295 0.83293 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.78 71.98 0.63 -5.36 15 2 C 0.07 3.63 2.48 -12.28 -0.03 3.60 15 3 H 0.01 0.61 7.87 -2.39 -0.02 0.59 15 4 C -0.52 -28.89 8.24 25.60 0.21 -28.68 15 5 H 0.05 2.79 7.60 -2.91 -0.02 2.76 15 6 C 0.02 0.92 5.30 84.66 0.45 1.37 15 7 N -0.92 -52.48 11.32 21.45 0.24 -52.24 15 8 Si 0.95 43.83 29.54 68.60 2.03 45.86 15 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 12 C 0.00 0.10 4.73 -19.89 -0.09 0.00 15 13 C -0.21 -7.87 9.52 22.40 0.21 -7.66 15 14 C 0.23 6.92 6.75 38.21 0.26 7.18 15 15 N -0.86 -17.15 9.09 -51.38 -0.47 -17.61 15 16 C -0.21 -6.28 9.68 22.42 0.22 -6.06 15 17 C 0.01 0.36 6.32 22.30 0.14 0.51 15 18 Cl -0.08 -2.28 28.95 -2.72 -0.08 -2.36 15 19 C -0.18 -7.21 8.49 22.31 0.19 -7.03 15 20 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.06 3.31 6.07 -2.39 -0.01 3.30 15 22 H 0.03 1.44 7.38 -2.39 -0.02 1.43 15 23 H 0.26 14.31 8.31 -92.71 -0.77 13.54 15 24 H 0.12 4.30 7.94 -2.91 -0.02 4.28 15 25 H 0.41 5.85 8.84 -92.71 -0.82 5.03 15 26 H 0.41 6.88 8.84 -92.71 -0.82 6.06 15 27 H 0.15 3.48 8.06 -2.91 -0.02 3.45 15 28 H 0.11 4.86 7.57 -2.91 -0.02 4.84 15 Total: -1.00 -60.67 257.14 3.46 -57.21 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -0.45 Total: 11.27 kcal Atomic # 6 Polarization: -44.31 SS G_CDS: 2.19 Total: -42.12 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -0.22 Total: -69.86 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.08 Total: -2.36 kcal Total: -60.67 3.46 -57.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.377 kcal (2) G-P(sol) polarization free energy of solvation -60.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds