Wall clock time and date at job start Mon Mar 30 2020 02:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76198 * 100.00078 * 2 1 4 4 N 1.32803 * 119.66705 * 180.02562 * 3 2 1 5 5 C 1.32375 * 119.45330 * 179.73485 * 4 3 2 6 6 C 1.38759 * 118.83730 * 0.50296 * 5 4 3 7 7 C 1.50696 * 120.34768 * 179.74294 * 6 5 4 8 8 H 1.08998 * 109.47669 * 204.72849 * 7 6 5 9 9 C 1.52998 * 109.47197 * 324.72944 * 7 6 5 10 10 C 1.50706 * 109.47259 * 84.72566 * 7 6 5 11 11 H 1.08000 * 119.99302 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00436 * 179.72713 * 10 7 6 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47154 * 89.99418 * 14 12 10 16 16 H 1.48493 * 109.47010 * 209.99942 * 14 12 10 17 17 H 1.48502 * 109.46736 * 329.99638 * 14 12 10 18 18 N 1.32185 * 119.30421 * 359.47260 * 6 5 4 19 19 N 1.28743 * 120.49356 * 0.27559 * 18 6 5 20 20 H 1.09001 * 109.47116 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47343 * 300.00004 * 1 2 3 22 22 H 1.09005 * 109.47061 * 59.99932 * 1 2 3 23 23 H 1.07998 * 120.57811 * 180.25371 * 5 4 3 24 24 H 1.09005 * 109.47120 * 180.02562 * 9 7 6 25 25 H 1.09002 * 109.47051 * 299.99351 * 9 7 6 26 26 H 1.09002 * 109.47539 * 59.99761 * 9 7 6 27 27 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.3665 2.1821 -0.0005 5 6 3.5915 3.4866 -0.0058 6 6 2.5075 4.3528 -0.0001 7 6 2.7245 5.8440 -0.0001 8 1 1.8552 6.3378 0.4343 9 6 3.9672 6.1786 0.8273 10 6 2.9194 6.3234 -1.4155 11 1 2.8887 5.6186 -2.2332 12 6 3.1307 7.6624 -1.6670 13 7 3.1616 8.5215 -0.6717 14 14 3.3715 8.2567 -3.4215 15 1 2.0544 8.6087 -4.0101 16 1 4.2500 9.4538 -3.4224 17 1 4.0016 7.1797 -4.2267 18 7 1.2825 3.8561 -0.0001 19 7 1.0939 2.5826 0.0000 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 4.6012 3.8699 -0.0105 24 1 4.1239 7.2573 0.8277 25 1 3.8263 5.8320 1.8510 26 1 4.8366 5.6849 0.3929 27 1 3.3099 9.4637 -0.8486 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260475243.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:47 Heat of formation + Delta-G solvation = 42.182769 kcal Electronic energy + Delta-G solvation = -13003.806146 eV Core-core repulsion = 10694.757033 eV Total energy + Delta-G solvation = -2309.049113 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.72857 -37.04760 -35.99979 -34.15678 -31.56347 -29.77426 -27.50287 -26.60322 -26.27525 -22.56280 -19.90617 -19.56238 -18.51421 -17.07825 -16.80793 -16.40237 -15.51051 -15.23500 -14.79613 -14.39364 -13.84148 -13.53784 -13.34402 -13.19142 -12.95693 -12.84833 -12.77634 -12.31269 -12.24666 -11.86893 -11.71194 -11.66765 -10.90699 -10.60647 -10.26809 -8.90946 -8.17382 -6.33507 -0.57288 -0.40107 0.03934 1.10254 1.42041 1.44291 1.53214 2.28940 2.44699 2.72572 3.08452 3.11428 3.37091 3.97634 4.13456 4.28862 4.34748 4.73333 4.86137 4.93396 5.07238 5.09586 5.48645 5.64613 5.74317 5.97437 6.16319 6.70059 7.28425 7.35508 8.87240 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.047916 B = 0.006698 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.221401 B = 4179.265229 C = 4353.250431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S 0.028 5.972 3 C 0.182 3.818 4 N -0.463 5.463 5 C 0.148 3.852 6 C 0.053 3.947 7 C 0.095 3.905 8 H 0.021 0.979 9 C -0.130 4.130 10 C -0.529 4.529 11 H 0.044 0.956 12 C 0.028 3.972 13 N -0.906 5.906 14 Si 0.957 3.043 15 H -0.281 1.281 16 H -0.275 1.275 17 H -0.270 1.270 18 N -0.220 5.220 19 N -0.300 5.300 20 H 0.146 0.854 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.214 0.786 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -13.022 1.566 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.257 5.743 3 C -0.194 4.194 4 N -0.185 5.185 5 C -0.033 4.033 6 C -0.099 4.099 7 C 0.074 3.926 8 H 0.039 0.961 9 C -0.188 4.188 10 C -0.567 4.567 11 H 0.062 0.938 12 C -0.172 4.172 13 N -0.544 5.544 14 Si 0.782 3.218 15 H -0.207 1.207 16 H -0.200 1.200 17 H -0.195 1.195 18 N -0.069 5.069 19 N -0.149 5.149 20 H 0.164 0.836 21 H 0.107 0.893 22 H 0.104 0.896 23 H 0.231 0.769 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.934 -14.300 1.620 14.421 hybrid contribution -0.068 2.181 -0.847 2.341 sum -1.002 -12.118 0.773 12.184 Atomic orbital electron populations 1.23734 0.91831 1.08648 1.07007 1.85434 1.09338 0.89375 1.90129 1.27160 0.89878 1.04355 0.98019 1.69253 1.21137 1.15938 1.12188 1.24507 1.02708 0.87820 0.88229 1.24309 0.91009 1.01986 0.92558 1.17658 0.96437 0.81742 0.96794 0.96107 1.21756 0.96954 1.03967 0.96107 1.21008 1.51176 0.93292 0.91259 0.93771 1.25563 0.94318 0.96488 1.00874 1.69964 1.48998 1.03175 1.32244 0.85576 0.78045 0.78095 0.80083 1.20680 1.20007 1.19471 1.73449 1.22152 1.04683 1.06577 1.74080 1.28837 0.97926 1.14098 0.83569 0.89325 0.89619 0.76928 0.90854 0.94825 0.92604 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.64 113.37 1.09 -1.65 15 2 S 0.03 0.71 22.91 -56.49 -1.29 -0.59 15 3 C 0.18 6.59 7.92 180.29 1.43 8.02 15 4 N -0.46 -17.18 10.51 -195.94 -2.06 -19.24 15 5 C 0.15 5.59 10.41 84.74 0.88 6.47 15 6 C 0.05 2.34 5.80 42.63 0.25 2.59 15 7 C 0.09 4.60 2.64 -12.29 -0.03 4.57 15 8 H 0.02 1.14 8.14 -2.39 -0.02 1.12 15 9 C -0.13 -5.56 8.42 71.98 0.61 -4.95 15 10 C -0.53 -27.91 8.54 25.60 0.22 -27.69 15 11 H 0.04 2.37 7.74 -2.91 -0.02 2.35 15 12 C 0.03 1.48 5.30 84.65 0.45 1.93 15 13 N -0.91 -48.94 11.34 21.45 0.24 -48.70 15 14 Si 0.96 41.85 29.54 68.60 2.03 43.88 15 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 16 H -0.28 -11.57 7.11 99.48 0.71 -10.87 15 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 18 N -0.22 -10.04 11.56 -47.41 -0.55 -10.59 15 19 N -0.30 -12.05 10.33 -58.26 -0.60 -12.65 15 20 H 0.15 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.09 1.82 8.12 -2.40 -0.02 1.80 15 22 H 0.08 1.82 8.12 -2.39 -0.02 1.80 15 23 H 0.21 6.75 6.43 -2.91 -0.02 6.73 15 24 H 0.07 3.52 6.09 -2.38 -0.01 3.51 15 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 26 H 0.06 2.11 6.57 -2.39 -0.02 2.10 15 27 H 0.27 13.69 8.31 -92.71 -0.77 12.92 15 Total: -1.00 -60.59 251.99 3.84 -56.75 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 1.18 Total: 1.85 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 4.89 Total: -10.72 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -2.97 Total: -91.18 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -1.29 Total: -0.59 kcal Total: -60.59 3.84 -56.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260475243.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.932 kcal (2) G-P(sol) polarization free energy of solvation -60.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds