Wall clock time and date at job start Mon Mar 30 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47365 * 2 1 4 4 C 1.50706 * 109.47082 * 119.99820 * 2 1 3 5 5 H 1.07994 * 119.99865 * 119.99760 * 4 2 1 6 6 C 1.37882 * 119.99534 * 300.00291 * 4 2 1 7 7 N 1.31512 * 119.99519 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00195 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47196 * 90.00540 * 8 6 4 10 10 H 1.48498 * 109.47033 * 210.00431 * 8 6 4 11 11 H 1.48502 * 109.47095 * 330.00259 * 8 6 4 12 12 C 1.50701 * 109.47272 * 239.99731 * 2 1 3 13 13 C 1.38904 * 120.04682 * 114.15683 * 12 2 1 14 14 N 1.39670 * 120.06601 * 359.97438 * 13 12 2 15 15 C 1.38897 * 119.86435 * 180.02562 * 13 12 2 16 16 C 1.38132 * 119.95425 * 359.97438 * 15 13 12 17 17 C 1.38244 * 120.08452 * 0.02575 * 16 15 13 18 18 C 1.38208 * 120.04002 * 294.47195 * 12 2 1 19 19 Cl 1.73589 * 119.97855 * 0.02562 * 18 12 2 20 20 H 1.09011 * 109.46651 * 60.00060 * 1 2 3 21 21 H 1.08994 * 109.47365 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47298 * 300.00851 * 1 2 3 23 23 H 0.97001 * 120.00094 * 179.97438 * 7 6 4 24 24 H 0.97000 * 120.00501 * 173.04420 * 14 13 12 25 25 H 0.97006 * 120.00049 * 353.04144 * 14 13 12 26 26 H 1.08007 * 120.02480 * 180.02562 * 15 13 12 27 27 H 1.08000 * 119.95838 * 180.02562 * 16 15 13 28 28 H 1.08002 * 119.92868 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6257 1.2799 2.6540 9 1 -0.8021 0.8746 2.6993 10 1 0.9770 1.9955 3.9069 11 1 0.8490 2.1773 1.4921 12 6 2.0323 -0.7105 -1.2304 13 6 2.7281 -0.0063 -2.2048 14 7 2.9629 1.3614 -2.0463 15 6 3.1890 -0.6648 -3.3376 16 6 2.9550 -2.0173 -3.4922 17 6 2.2623 -2.7162 -2.5212 18 6 1.7957 -2.0623 -1.3939 19 17 0.9187 -2.9422 -0.1814 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 1.9038 -0.5273 4.4376 24 1 3.5333 1.8317 -2.6742 25 1 2.5553 1.8411 -1.3082 26 1 3.7306 -0.1198 -4.0967 27 1 3.3137 -2.5295 -4.3728 28 1 2.0804 -3.7736 -2.6449 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260557845.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:38 Heat of formation + Delta-G solvation = 22.525433 kcal Electronic energy + Delta-G solvation = -13577.498070 eV Core-core repulsion = 11233.260093 eV Total energy + Delta-G solvation = -2344.237977 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.16314 -35.62238 -34.60945 -33.61337 -31.52043 -28.95759 -27.88171 -24.98791 -22.89791 -21.59345 -19.61831 -17.22244 -16.69533 -16.00036 -15.19593 -14.40585 -13.93342 -13.72073 -13.17112 -13.05831 -12.67505 -12.13316 -11.73942 -11.50282 -11.17363 -10.92578 -10.76519 -10.20340 -10.14059 -9.88662 -9.62063 -9.29319 -8.84834 -8.46977 -7.83019 -6.99507 -5.98096 -3.93765 1.88094 2.08022 3.11064 3.29868 3.37071 3.41159 4.32994 4.36832 4.45742 5.31821 5.34774 5.52521 5.71680 5.95619 6.14702 6.21060 6.39111 6.50239 6.68093 6.79981 6.89048 6.92683 7.11066 7.25289 7.48941 7.78031 7.94023 8.21514 8.59933 9.08519 9.62438 11.14984 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030283 B = 0.012421 C = 0.010063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.390500 B = 2253.767609 C = 2781.903931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 H 0.029 0.971 4 C -0.492 4.492 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.884 3.116 9 H -0.280 1.280 10 H -0.300 1.300 11 H -0.271 1.271 12 C -0.099 4.099 13 C 0.216 3.784 14 N -0.877 5.877 15 C -0.204 4.204 16 C -0.084 4.084 17 C -0.178 4.178 18 C 0.020 3.980 19 Cl -0.048 7.048 20 H 0.025 0.975 21 H 0.067 0.933 22 H 0.040 0.960 23 H 0.261 0.739 24 H 0.391 0.609 25 H 0.401 0.599 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 1.133 -12.248 12.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.047 0.953 4 C -0.530 4.530 5 H 0.100 0.900 6 C -0.131 4.131 7 N -0.539 5.539 8 Si 0.715 3.285 9 H -0.208 1.208 10 H -0.228 1.228 11 H -0.196 1.196 12 C -0.104 4.104 13 C 0.112 3.888 14 N -0.419 5.419 15 C -0.227 4.227 16 C -0.103 4.103 17 C -0.198 4.198 18 C -0.008 4.008 19 Cl -0.019 7.019 20 H 0.044 0.956 21 H 0.085 0.915 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.218 0.782 25 H 0.233 0.767 26 H 0.132 0.868 27 H 0.137 0.863 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.502 1.016 -11.928 11.981 hybrid contribution -0.551 1.125 0.394 1.313 sum -1.054 2.141 -11.534 11.778 Atomic orbital electron populations 1.22306 0.98407 1.02182 0.98184 1.18127 0.91896 0.95434 0.91466 0.95320 1.20957 1.31217 1.13210 0.87618 0.89964 1.24923 0.95846 0.96401 0.95892 1.69882 1.45980 1.40294 0.97748 0.86930 0.80942 0.84120 0.76525 1.20754 1.22784 1.19630 1.19569 1.01564 0.92615 0.96678 1.17497 0.94059 0.84675 0.92590 1.42581 1.57605 1.06551 1.35130 1.20472 1.08657 0.95391 0.98227 1.20564 0.98155 0.93504 0.98114 1.20725 1.04407 0.99877 0.94824 1.20515 0.97570 0.91976 0.90733 1.98357 1.73774 1.74758 1.54987 0.95598 0.91451 0.94192 0.92863 0.78179 0.76711 0.86773 0.86341 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.48 37.16 0.31 -3.09 15 2 C 0.05 1.16 1.89 -92.92 -0.18 0.98 15 3 H 0.03 0.66 4.80 -51.93 -0.25 0.41 15 4 C -0.49 -13.48 7.22 -34.44 -0.25 -13.73 15 5 H 0.08 2.48 6.99 -52.49 -0.37 2.11 15 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 15 7 N -0.90 -27.43 13.96 55.43 0.77 -26.66 15 8 Si 0.88 21.87 24.37 -169.99 -4.14 17.73 15 9 H -0.28 -6.86 6.87 56.52 0.39 -6.48 15 10 H -0.30 -7.50 7.11 56.52 0.40 -7.09 15 11 H -0.27 -6.29 6.53 56.52 0.37 -5.92 15 12 C -0.10 -2.08 4.77 -104.39 -0.50 -2.58 15 13 C 0.22 3.88 6.73 -83.80 -0.56 3.31 15 14 N -0.88 -13.32 8.99 32.41 0.29 -13.02 15 15 C -0.20 -3.17 9.90 -39.38 -0.39 -3.56 15 16 C -0.08 -1.28 10.04 -39.62 -0.40 -1.67 15 17 C -0.18 -3.04 9.83 -39.51 -0.39 -3.43 15 18 C 0.02 0.40 5.89 -39.52 -0.23 0.17 15 19 Cl -0.05 -1.02 23.43 -51.86 -1.21 -2.24 15 20 H 0.02 0.50 8.14 -51.92 -0.42 0.08 15 21 H 0.07 1.49 5.56 -51.93 -0.29 1.20 15 22 H 0.04 0.92 3.27 -51.93 -0.17 0.75 15 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 24 H 0.39 4.57 8.85 -40.82 -0.36 4.21 15 25 H 0.40 6.37 6.53 -40.82 -0.27 6.11 15 26 H 0.11 1.44 8.06 -52.48 -0.42 1.02 15 27 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 28 H 0.12 1.80 8.06 -52.49 -0.42 1.37 15 LS Contribution 238.06 15.07 3.59 3.59 Total: -1.00 -30.42 238.06 -5.96 -36.37 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -2.57 Total: 5.93 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -2.68 Total: -21.70 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 1.06 Total: -39.68 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.73 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.21 Total: -2.24 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.42 -5.96 -36.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260557845.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.898 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds