Wall clock time and date at job start Mon Mar 30 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47365 * 2 1 4 4 C 1.50706 * 109.47082 * 119.99820 * 2 1 3 5 5 H 1.07994 * 119.99865 * 119.99760 * 4 2 1 6 6 C 1.37882 * 119.99534 * 300.00291 * 4 2 1 7 7 N 1.31512 * 119.99519 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00195 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47196 * 90.00540 * 8 6 4 10 10 H 1.48498 * 109.47033 * 210.00431 * 8 6 4 11 11 H 1.48502 * 109.47095 * 330.00259 * 8 6 4 12 12 C 1.50701 * 109.47272 * 239.99731 * 2 1 3 13 13 C 1.38904 * 120.04682 * 114.15683 * 12 2 1 14 14 N 1.39670 * 120.06601 * 359.97438 * 13 12 2 15 15 C 1.38897 * 119.86435 * 180.02562 * 13 12 2 16 16 C 1.38132 * 119.95425 * 359.97438 * 15 13 12 17 17 C 1.38244 * 120.08452 * 0.02575 * 16 15 13 18 18 C 1.38208 * 120.04002 * 294.47195 * 12 2 1 19 19 Cl 1.73589 * 119.97855 * 0.02562 * 18 12 2 20 20 H 1.09011 * 109.46651 * 60.00060 * 1 2 3 21 21 H 1.08994 * 109.47365 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47298 * 300.00851 * 1 2 3 23 23 H 0.97001 * 120.00094 * 179.97438 * 7 6 4 24 24 H 0.97000 * 120.00501 * 173.04420 * 14 13 12 25 25 H 0.97006 * 120.00049 * 353.04144 * 14 13 12 26 26 H 1.08007 * 120.02480 * 180.02562 * 15 13 12 27 27 H 1.08000 * 119.95838 * 180.02562 * 16 15 13 28 28 H 1.08002 * 119.92868 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6257 1.2799 2.6540 9 1 -0.8021 0.8746 2.6993 10 1 0.9770 1.9955 3.9069 11 1 0.8490 2.1773 1.4921 12 6 2.0323 -0.7105 -1.2304 13 6 2.7281 -0.0063 -2.2048 14 7 2.9629 1.3614 -2.0463 15 6 3.1890 -0.6648 -3.3376 16 6 2.9550 -2.0173 -3.4922 17 6 2.2623 -2.7162 -2.5212 18 6 1.7957 -2.0623 -1.3939 19 17 0.9187 -2.9422 -0.1814 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 1.9038 -0.5273 4.4376 24 1 3.5333 1.8317 -2.6742 25 1 2.5553 1.8411 -1.3082 26 1 3.7306 -0.1198 -4.0967 27 1 3.3137 -2.5295 -4.3728 28 1 2.0804 -3.7736 -2.6449 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260557845.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:38 Heat of formation + Delta-G solvation = 1.973902 kcal Electronic energy + Delta-G solvation = -13578.389251 eV Core-core repulsion = 11233.260093 eV Total energy + Delta-G solvation = -2345.129158 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.54516 -37.14877 -36.28803 -35.02359 -33.50672 -30.40950 -29.21982 -27.00550 -24.45781 -22.96195 -21.24201 -18.95180 -18.05312 -17.60595 -16.92005 -15.96556 -15.34997 -15.07742 -14.91625 -14.61111 -14.34160 -13.98511 -13.31240 -13.15890 -12.77839 -12.55893 -12.30088 -11.89318 -11.84146 -11.64834 -11.13051 -11.09678 -10.72630 -10.58995 -9.28510 -8.29175 -8.15800 -6.14078 0.51966 0.75436 1.33970 1.35744 1.46504 1.62114 2.39068 2.98956 3.12551 3.22554 4.06494 4.25735 4.32925 4.61880 4.65489 4.74264 4.88750 4.94260 5.11129 5.13172 5.40101 5.55718 5.65616 5.70907 5.84741 6.00348 6.45911 6.66496 6.88389 7.11459 7.44874 9.00590 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030283 B = 0.012421 C = 0.010063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.390500 B = 2253.767609 C = 2781.903931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 H 0.036 0.964 4 C -0.478 4.478 5 H 0.042 0.958 6 C 0.010 3.990 7 N -0.953 5.953 8 Si 0.940 3.060 9 H -0.277 1.277 10 H -0.305 1.305 11 H -0.243 1.243 12 C -0.140 4.140 13 C 0.210 3.790 14 N -0.869 5.869 15 C -0.197 4.197 16 C -0.070 4.070 17 C -0.187 4.187 18 C -0.002 4.002 19 Cl -0.075 7.075 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.030 0.970 23 H 0.260 0.740 24 H 0.409 0.591 25 H 0.398 0.602 26 H 0.152 0.848 27 H 0.161 0.839 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 2.447 -15.235 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.054 0.946 4 C -0.516 4.516 5 H 0.060 0.940 6 C -0.185 4.185 7 N -0.595 5.595 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.234 1.234 11 H -0.166 1.166 12 C -0.145 4.145 13 C 0.105 3.895 14 N -0.411 5.411 15 C -0.220 4.220 16 C -0.088 4.088 17 C -0.207 4.207 18 C -0.029 4.029 19 Cl -0.046 7.046 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.239 0.761 25 H 0.229 0.771 26 H 0.170 0.830 27 H 0.179 0.821 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.269 2.356 -14.964 15.151 hybrid contribution -0.518 0.643 1.177 1.437 sum -0.787 2.999 -13.787 14.132 Atomic orbital electron populations 1.22247 0.97692 1.02087 0.98910 1.17993 0.92494 0.95381 0.90833 0.94635 1.21153 1.29362 1.11604 0.89501 0.93960 1.25706 0.97580 0.99628 0.95617 1.70045 1.48515 1.42614 0.98293 0.85988 0.79099 0.80951 0.77089 1.20394 1.23372 1.16629 1.19483 1.04653 0.93217 0.97195 1.17684 0.93530 0.85624 0.92703 1.42532 1.57548 1.05692 1.35324 1.20921 1.07509 0.95734 0.97820 1.21078 0.95893 0.93481 0.98388 1.21007 1.04507 1.00906 0.94310 1.20795 0.98645 0.92126 0.91318 1.98339 1.74559 1.75287 1.56451 0.92886 0.92153 0.95147 0.93132 0.76057 0.77147 0.83030 0.82117 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.57 8.48 71.98 0.61 -5.96 15 2 C 0.05 2.38 1.89 -12.28 -0.02 2.35 15 3 H 0.04 1.57 4.80 -2.39 -0.01 1.56 15 4 C -0.48 -26.74 7.22 25.60 0.18 -26.56 15 5 H 0.04 2.65 6.99 -2.91 -0.02 2.63 15 6 C 0.01 0.59 5.45 84.66 0.46 1.05 15 7 N -0.95 -60.24 13.96 21.45 0.30 -59.94 15 8 Si 0.94 45.19 24.37 68.60 1.67 46.87 15 9 H -0.28 -13.06 6.87 99.48 0.68 -12.38 15 10 H -0.31 -14.82 7.11 99.48 0.71 -14.11 15 11 H -0.24 -10.42 6.53 99.48 0.65 -9.77 15 12 C -0.14 -5.71 4.77 -19.71 -0.09 -5.80 15 13 C 0.21 6.92 6.73 38.21 0.26 7.18 15 14 N -0.87 -23.60 8.99 -51.39 -0.46 -24.06 15 15 C -0.20 -5.21 9.90 22.40 0.22 -4.99 15 16 C -0.07 -1.80 10.04 22.25 0.22 -1.58 15 17 C -0.19 -5.96 9.83 22.32 0.22 -5.74 15 18 C 0.00 -0.06 5.89 22.31 0.13 0.07 15 19 Cl -0.08 -3.28 23.43 -2.72 -0.06 -3.35 15 20 H 0.05 1.96 8.14 -2.38 -0.02 1.94 15 21 H 0.06 2.66 5.56 -2.39 -0.01 2.65 15 22 H 0.03 1.34 3.27 -2.39 -0.01 1.34 15 23 H 0.26 15.57 8.31 -92.71 -0.77 14.80 15 24 H 0.41 7.97 8.85 -92.71 -0.82 7.15 15 25 H 0.40 11.55 6.53 -92.70 -0.61 10.95 15 26 H 0.15 2.88 8.06 -2.91 -0.02 2.85 15 27 H 0.16 2.80 8.06 -2.91 -0.02 2.78 15 28 H 0.14 3.78 8.06 -2.91 -0.02 3.75 15 Total: -1.00 -67.67 238.06 3.34 -64.33 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -0.30 Total: 16.13 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 2.19 Total: -39.97 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -0.16 Total: -84.00 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.67 Total: 46.87 kcal Atomic # 17 Polarization: -3.28 SS G_CDS: -0.06 Total: -3.35 kcal Total: -67.67 3.34 -64.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260557845.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.302 kcal (2) G-P(sol) polarization free energy of solvation -67.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds