Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76201 * 99.99795 * 2 1 4 4 N 1.32553 * 119.18767 * 0.02562 * 3 2 1 5 5 C 1.32469 * 120.92951 * 179.97438 * 4 3 2 6 6 C 1.38146 * 119.29648 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.74847 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47129 * 264.99657 * 7 6 5 9 9 H 1.07998 * 120.00154 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00078 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99936 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00210 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47270 * 89.99642 * 12 10 8 14 14 H 1.48496 * 109.47233 * 209.99972 * 12 10 8 15 15 H 1.48505 * 109.46607 * 330.00317 * 12 10 8 16 16 C 1.39656 * 118.50047 * 359.97438 * 6 5 4 17 17 N 1.38529 * 120.48046 * 180.02562 * 16 6 5 18 18 N 1.32504 * 119.18147 * 180.02562 * 3 2 1 19 19 H 1.09006 * 109.47037 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47221 * 299.99951 * 1 2 3 21 21 H 1.08992 * 109.47055 * 59.99990 * 1 2 3 22 22 H 1.08000 * 120.35281 * 180.02562 * 5 4 3 23 23 H 1.09000 * 109.47293 * 24.99963 * 7 6 5 24 24 H 1.09004 * 109.47469 * 144.99922 * 7 6 5 25 25 H 0.97001 * 120.00091 * 179.97438 * 11 10 8 26 26 H 0.97007 * 119.99952 * 179.97438 * 17 16 6 27 27 H 0.96999 * 120.00757 * 359.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0885 2.5728 0.0005 5 6 1.2787 3.8837 0.0010 6 6 2.5681 4.3797 0.0005 7 6 2.8222 5.8651 0.0017 8 6 3.0280 6.3406 -1.4135 9 1 2.9792 5.6376 -2.2319 10 6 3.2775 7.6734 -1.6635 11 7 3.3354 8.5297 -0.6670 12 14 3.5319 8.2630 -3.4177 13 1 2.2243 8.6540 -4.0030 14 1 4.4448 9.4342 -3.4188 15 1 4.1286 7.1692 -4.2258 16 6 3.6307 3.4735 0.0000 17 7 4.9400 3.9259 0.0000 18 7 3.3674 2.1707 -0.0005 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 0.4348 4.5576 0.0019 23 1 1.9658 6.3799 0.4371 24 1 3.7137 6.0808 0.5906 25 1 3.5113 9.4673 -0.8429 26 1 5.6728 3.2902 0.0000 27 1 5.1242 4.8782 0.0000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260656148.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = 13.520320 kcal Electronic energy + Delta-G solvation = -12944.263454 eV Core-core repulsion = 10633.971444 eV Total energy + Delta-G solvation = -2310.292010 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.70594 -36.75103 -35.55107 -33.90479 -32.12964 -29.93775 -29.02190 -25.99996 -24.57047 -23.12097 -19.61926 -19.18928 -18.51899 -16.92927 -16.65214 -16.40054 -16.08354 -15.45117 -14.93367 -14.45177 -14.42050 -14.15378 -13.44720 -13.39626 -13.07263 -12.75595 -12.63809 -12.35288 -11.77139 -11.68844 -11.18573 -10.96555 -10.64086 -10.18031 -9.38867 -8.58497 -8.16558 -6.32831 0.05647 0.32995 0.42865 1.32588 1.39750 1.42056 1.51461 2.39009 2.55758 2.88830 3.10973 3.53790 3.87758 4.18436 4.40680 4.42672 4.48374 4.68647 5.03998 5.25552 5.43931 5.53968 5.71375 5.87586 6.15086 6.33538 6.71434 6.78306 7.21565 7.36223 8.87490 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.045394 B = 0.006698 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.674741 B = 4179.204323 C = 4327.834495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.016 6.016 3 C 0.296 3.704 4 N -0.566 5.566 5 C 0.161 3.839 6 C -0.226 4.226 7 C 0.081 3.919 8 C -0.523 4.523 9 H 0.044 0.956 10 C 0.017 3.983 11 N -0.920 5.920 12 Si 0.956 3.044 13 H -0.276 1.276 14 H -0.280 1.280 15 H -0.272 1.272 16 C 0.439 3.561 17 N -0.816 5.816 18 N -0.581 5.581 19 H 0.136 0.864 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.176 0.824 23 H 0.014 0.986 24 H 0.018 0.982 25 H 0.266 0.734 26 H 0.411 0.589 27 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 -12.466 1.324 12.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.215 5.785 3 C -0.081 4.081 4 N -0.289 5.289 5 C 0.000 4.000 6 C -0.238 4.238 7 C 0.043 3.957 8 C -0.561 4.561 9 H 0.063 0.937 10 C -0.182 4.182 11 N -0.560 5.560 12 Si 0.781 3.219 13 H -0.202 1.202 14 H -0.205 1.205 15 H -0.197 1.197 16 C 0.189 3.811 17 N -0.361 5.361 18 N -0.309 5.309 19 H 0.154 0.846 20 H 0.105 0.895 21 H 0.102 0.898 22 H 0.193 0.807 23 H 0.033 0.967 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.241 0.759 27 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.909 -14.200 1.369 14.393 hybrid contribution -0.058 2.936 -0.793 3.042 sum -1.967 -11.264 0.576 11.449 Atomic orbital electron populations 1.23568 0.91695 1.07733 1.06841 1.85355 1.09547 0.92255 1.91323 1.24978 0.86342 1.01490 0.95332 1.68693 1.33621 1.04082 1.22502 1.22929 0.96188 0.90946 0.89945 1.21484 0.94217 0.99243 1.08845 1.17757 0.96723 0.84974 0.96268 1.21215 1.49169 0.93173 0.92585 0.93745 1.25704 0.94877 0.96867 1.00762 1.70035 1.49699 1.03610 1.32647 0.85591 0.78168 0.77857 0.80265 1.20188 1.20489 1.19704 1.18483 0.87557 0.87973 0.87084 1.42166 1.02459 1.11636 1.79827 1.67943 1.22719 1.14451 1.25837 0.84627 0.89483 0.89752 0.80719 0.96721 0.96419 0.92484 0.75854 0.74580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.62 113.37 1.09 -1.55 15 2 S -0.02 -0.45 22.89 -56.49 -1.29 -1.74 15 3 C 0.30 11.04 7.85 180.44 1.42 12.46 15 4 N -0.57 -21.30 9.13 -196.71 -1.80 -23.10 15 5 C 0.16 6.44 10.96 84.58 0.93 7.36 15 6 C -0.23 -9.76 5.12 -19.55 -0.10 -9.86 15 7 C 0.08 3.95 4.61 29.10 0.13 4.08 15 8 C -0.52 -27.62 9.09 25.60 0.23 -27.39 15 9 H 0.04 2.40 7.74 -2.91 -0.02 2.38 15 10 C 0.02 0.92 5.46 84.65 0.46 1.39 15 11 N -0.92 -51.37 13.29 21.45 0.28 -51.09 15 12 Si 0.96 42.28 29.54 68.60 2.03 44.30 15 13 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 14 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 16 C 0.44 17.83 7.80 133.20 1.04 18.87 15 17 N -0.82 -28.19 8.98 -55.12 -0.50 -28.68 15 18 N -0.58 -23.06 10.43 -194.02 -2.02 -25.08 15 19 H 0.14 1.77 8.14 -2.39 -0.02 1.75 15 20 H 0.09 1.85 8.11 -2.39 -0.02 1.83 15 21 H 0.08 1.85 8.11 -2.40 -0.02 1.83 15 22 H 0.18 6.29 8.06 -2.91 -0.02 6.27 15 23 H 0.01 0.75 8.07 -2.39 -0.02 0.73 15 24 H 0.02 0.88 6.92 -2.38 -0.02 0.86 15 25 H 0.27 14.06 8.31 -92.71 -0.77 13.29 15 26 H 0.41 11.70 8.95 -92.70 -0.83 10.87 15 27 H 0.42 15.02 7.06 -92.71 -0.65 14.37 15 Total: -1.00 -61.30 255.57 1.63 -59.66 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.27 Total: 20.36 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 5.20 Total: 5.36 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -4.03 Total: -127.95 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.29 Total: -1.74 kcal Total: -61.30 1.63 -59.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656148.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.185 kcal (2) G-P(sol) polarization free energy of solvation -61.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds