Wall clock time and date at job start Mon Mar 30 2020 02:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36482 * 125.64188 * 2 1 4 4 C 1.34852 * 108.22397 * 180.02562 * 3 2 1 5 5 C 1.41122 * 107.40351 * 359.97438 * 4 3 2 6 6 C 1.34860 * 107.37158 * 0.03348 * 5 4 3 7 7 Cl 1.73596 * 125.82032 * 180.02562 * 6 5 4 8 8 C 1.51188 * 109.26990 * 179.97438 * 5 4 3 9 9 C 1.54345 * 105.35150 * 17.28488 * 8 5 4 10 10 C 1.51190 * 143.17605 * 180.02562 * 4 3 2 11 11 H 1.09002 * 110.28787 * 281.66650 * 10 4 3 12 12 C 1.50702 * 110.36824 * 43.73466 * 10 4 3 13 13 H 1.08000 * 119.99662 * 357.34930 * 12 10 4 14 14 C 1.37873 * 119.99983 * 177.35106 * 12 10 4 15 15 N 1.31513 * 120.00359 * 359.97438 * 14 12 10 16 16 Si 1.86809 * 119.99907 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47024 * 59.99454 * 16 14 12 18 18 H 1.48494 * 109.46914 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.46557 * 299.99538 * 16 14 12 20 20 H 1.08998 * 109.47142 * 89.99391 * 1 2 3 21 21 H 1.08999 * 109.47686 * 210.00150 * 1 2 3 22 22 H 1.09002 * 109.47225 * 330.00320 * 1 2 3 23 23 H 1.08002 * 125.88762 * 0.07284 * 3 2 1 24 24 H 1.09002 * 110.28557 * 258.28661 * 8 5 4 25 25 H 1.09004 * 110.28403 * 136.27901 * 8 5 4 26 26 H 1.08997 * 110.74414 * 91.65140 * 9 8 5 27 27 H 1.09001 * 110.73666 * 214.99018 * 9 8 5 28 28 H 0.97005 * 120.00281 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2603 1.1092 0.0000 4 6 3.5470 0.7055 -0.0006 5 6 3.5466 -0.7057 -0.0003 6 6 2.2594 -1.1081 -0.0004 7 17 1.7097 -2.7547 0.0005 8 6 4.9737 -1.2050 -0.0016 9 6 5.8291 0.0015 0.4396 10 6 4.9730 1.2078 -0.0006 11 1 5.2605 1.5291 -1.0017 12 6 5.1288 2.3443 0.9769 13 1 4.2705 2.7101 1.5208 14 6 6.3669 2.9169 1.1766 15 7 7.4122 2.4711 0.5146 16 14 6.5601 4.3251 2.3888 17 1 6.1515 3.8723 3.7427 18 1 7.9796 4.7599 2.4202 19 1 5.7029 5.4620 1.9673 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.9181 2.1335 0.0011 24 1 5.2609 -1.5259 -1.0029 25 1 5.0870 -2.0272 0.7051 26 1 5.9683 0.0014 1.5207 27 1 6.7902 0.0018 -0.0746 28 1 8.2834 2.8738 0.6555 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260989402.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:28 Heat of formation + Delta-G solvation = 27.448078 kcal Electronic energy + Delta-G solvation = -13278.970949 eV Core-core repulsion = 10934.946435 eV Total energy + Delta-G solvation = -2344.024515 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.30039 -37.75134 -37.34425 -34.45659 -31.92814 -30.67820 -28.00377 -26.64618 -25.25917 -22.02762 -20.63640 -20.04249 -18.26729 -17.55446 -16.46856 -16.30735 -15.30494 -15.19341 -15.08766 -14.15824 -13.72453 -13.47562 -13.29203 -13.02157 -12.70063 -12.61243 -12.43376 -12.31857 -12.27454 -11.87483 -11.55849 -11.19590 -10.91814 -10.43069 -9.02960 -8.81276 -8.03499 -6.13895 0.83080 1.17944 1.45071 1.46876 1.54170 2.06396 2.24278 2.50578 3.25638 3.69450 4.23762 4.29488 4.43961 4.47834 4.61385 4.67031 4.83860 4.93519 5.13271 5.29140 5.53573 5.55040 5.71177 5.84210 5.98296 6.03752 6.26069 6.45226 6.47976 6.93273 7.52597 9.03767 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.042511 B = 0.007992 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.497879 B = 3502.551706 C = 3974.462679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.446 5.446 3 C 0.008 3.992 4 C -0.173 4.173 5 C -0.191 4.191 6 C 0.063 3.937 7 Cl -0.019 7.019 8 C -0.037 4.037 9 C -0.078 4.078 10 C 0.108 3.892 11 H 0.001 0.999 12 C -0.522 4.522 13 H 0.051 0.949 14 C 0.013 3.987 15 N -0.920 5.920 16 Si 0.953 3.047 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.270 1.270 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.106 0.894 23 H 0.184 0.816 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.069 -6.550 -0.834 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.126 5.126 3 C -0.121 4.121 4 C -0.179 4.179 5 C -0.200 4.200 6 C -0.074 4.074 7 Cl 0.009 6.991 8 C -0.074 4.074 9 C -0.116 4.116 10 C 0.089 3.911 11 H 0.019 0.981 12 C -0.560 4.560 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.560 5.560 16 Si 0.779 3.221 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.195 1.195 20 H 0.106 0.894 21 H 0.110 0.890 22 H 0.125 0.875 23 H 0.201 0.799 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.338 -6.670 -0.856 14.937 hybrid contribution 0.446 0.660 0.522 0.953 sum -12.891 -6.009 -0.334 14.227 Atomic orbital electron populations 1.22307 0.74150 1.05863 1.04716 1.43947 1.07494 1.03051 1.58129 1.21083 0.88688 0.91354 1.10942 1.20975 0.95665 0.94635 1.06628 1.20289 0.93350 0.96146 1.10204 1.19665 0.88491 0.81670 1.17545 1.98309 1.90276 1.12895 1.97648 1.20454 0.88566 0.97710 1.00710 1.21965 0.97291 0.93734 0.98618 1.17635 0.85738 0.93198 0.94534 0.98081 1.21403 0.94043 1.16907 1.23660 0.93057 1.25728 0.95746 0.99370 0.97711 1.70078 0.99867 1.43084 1.42943 0.85687 0.76917 0.79886 0.79599 1.19953 1.21058 1.19493 0.89362 0.89027 0.87543 0.79925 0.91205 0.91445 0.94681 0.93194 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 10.95 127.77 1.40 2.73 15 2 N -0.45 -14.04 3.15 -536.78 -1.69 -15.73 15 3 C 0.01 0.29 11.44 83.19 0.95 1.24 15 4 C -0.17 -7.93 6.18 -19.78 -0.12 -8.05 15 5 C -0.19 -7.98 6.90 -19.78 -0.14 -8.12 15 6 C 0.06 2.19 7.40 83.22 0.62 2.81 15 7 Cl -0.02 -0.54 28.73 -2.72 -0.08 -0.62 15 8 C -0.04 -1.52 6.75 30.46 0.21 -1.32 15 9 C -0.08 -3.90 5.60 31.50 0.18 -3.72 15 10 C 0.11 5.76 2.79 -11.68 -0.03 5.73 15 11 H 0.00 0.08 8.14 -2.39 -0.02 0.06 15 12 C -0.52 -29.60 8.47 25.60 0.22 -29.38 15 13 H 0.05 2.86 7.76 -2.91 -0.02 2.83 15 14 C 0.01 0.73 5.33 84.65 0.45 1.18 15 15 N -0.92 -54.18 12.29 21.45 0.26 -53.92 15 16 Si 0.95 44.20 29.54 68.60 2.03 46.22 15 17 H -0.27 -12.45 7.11 99.48 0.71 -11.74 15 18 H -0.29 -12.96 7.11 99.48 0.71 -12.26 15 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 20 H 0.09 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.09 1.55 7.78 -2.39 -0.02 1.53 15 22 H 0.11 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.18 5.96 8.06 -2.91 -0.02 5.93 15 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.07 2.52 8.14 -2.38 -0.02 2.50 15 26 H 0.03 1.84 7.91 -2.39 -0.02 1.82 15 27 H 0.05 2.60 7.85 -2.39 -0.02 2.58 15 28 H 0.26 14.59 8.31 -92.70 -0.77 13.82 15 Total: -1.00 -64.96 255.21 5.40 -59.56 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: 1.15 Total: 1.38 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 3.73 Total: -36.90 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.43 Total: -69.65 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -64.96 5.40 -59.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989402.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.008 kcal (2) G-P(sol) polarization free energy of solvation -64.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds