Wall clock time and date at job start Mon Mar 30 2020 02:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38651 * 120.79752 * 2 1 4 4 C 1.38194 * 119.17417 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.59785 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46849 * 154.99614 * 5 4 3 7 7 C 1.52999 * 109.47207 * 34.99646 * 5 4 3 8 8 C 1.50693 * 109.47147 * 274.99704 * 5 4 3 9 9 H 1.08002 * 120.00063 * 359.97438 * 8 5 4 10 10 C 1.37877 * 120.00326 * 180.02562 * 8 5 4 11 11 N 1.31514 * 119.99519 * 359.97438 * 10 8 5 12 12 Si 1.86792 * 120.00341 * 179.97438 * 10 8 5 13 13 H 1.48502 * 109.47285 * 59.99427 * 12 10 8 14 14 H 1.48497 * 109.47380 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47234 * 299.99541 * 12 10 8 16 16 N 1.31877 * 120.79826 * 359.96997 * 4 3 2 17 17 C 1.31849 * 121.73547 * 0.05362 * 16 4 3 18 18 C 1.38342 * 120.74807 * 359.94813 * 17 16 4 19 19 Cl 1.73601 * 120.43292 * 180.29553 * 18 17 16 20 20 H 1.08994 * 109.47763 * 270.02749 * 1 2 3 21 21 H 1.09008 * 109.47006 * 30.02360 * 1 2 3 22 22 H 1.09003 * 109.47377 * 150.02147 * 1 2 3 23 23 H 1.07998 * 120.40873 * 359.95185 * 3 2 1 24 24 H 1.09000 * 109.47569 * 300.00075 * 7 5 4 25 25 H 1.09005 * 109.46961 * 59.99675 * 7 5 4 26 26 H 1.08995 * 109.47333 * 179.97438 * 7 5 4 27 27 H 0.97007 * 119.99995 * 180.02562 * 11 10 8 28 28 H 1.08003 * 119.62199 * 179.97438 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1910 0.0000 4 6 3.5983 1.1518 0.0005 5 6 4.3794 2.4406 0.0000 6 1 5.3641 2.2688 0.4348 7 6 3.6329 3.4898 0.8263 8 6 4.5345 2.9334 -1.4157 9 1 4.1102 2.3695 -2.2333 10 6 5.2189 4.1035 -1.6673 11 7 5.7360 4.7899 -0.6717 12 14 5.4117 4.7139 -3.4221 13 1 4.0705 4.9482 -4.0150 14 1 6.1813 5.9839 -3.4227 15 1 6.1362 3.6953 -4.2237 16 7 4.2411 0.0004 0.0016 17 6 3.6001 -1.1518 0.0012 18 6 2.2173 -1.1918 0.0007 19 17 1.3816 -2.7135 0.0078 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8902 -0.5135 23 1 1.6967 2.1374 -0.0008 24 1 2.6483 3.6616 0.3915 25 1 3.5207 3.1334 1.8503 26 1 4.1981 4.4218 0.8262 27 1 6.2172 5.6134 -0.8487 28 1 4.1610 -2.0748 0.0017 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261022361.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:57 Heat of formation + Delta-G solvation = -5.865300 kcal Electronic energy + Delta-G solvation = -13078.009536 eV Core-core repulsion = 10732.540445 eV Total energy + Delta-G solvation = -2345.469091 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.31654 -37.70759 -36.36008 -34.79854 -33.42643 -30.19708 -28.69224 -27.27909 -25.04779 -23.39296 -21.38599 -18.43808 -17.76967 -17.60272 -16.82215 -15.94261 -15.55557 -15.02676 -14.69802 -13.93397 -13.78829 -13.59512 -13.42518 -13.03554 -12.85675 -12.81252 -12.54940 -12.27474 -12.13920 -12.06751 -11.67623 -11.14117 -10.55327 -10.39711 -10.26274 -9.60169 -8.12623 -6.27624 0.07706 0.26788 1.07049 1.42564 1.44030 1.51864 2.40873 2.80444 3.14548 3.52404 3.70008 3.78465 4.07663 4.45531 4.56698 4.67722 4.74533 4.87200 4.94114 5.01959 5.14221 5.19571 5.29023 5.53504 5.71090 5.80471 6.01911 6.24861 6.77284 7.12774 7.39867 8.92085 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.042581 B = 0.006960 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.408156 B = 4022.167673 C = 4080.752316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.033 4.033 3 C -0.168 4.168 4 C 0.156 3.844 5 C 0.081 3.919 6 H 0.008 0.992 7 C -0.124 4.124 8 C -0.522 4.522 9 H 0.044 0.956 10 C 0.020 3.980 11 N -0.912 5.912 12 Si 0.958 3.042 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.278 1.278 16 N -0.513 5.513 17 C 0.108 3.892 18 C -0.116 4.116 19 Cl -0.046 7.046 20 H 0.095 0.905 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.150 0.850 24 H 0.047 0.953 25 H 0.028 0.972 26 H 0.065 0.935 27 H 0.265 0.735 28 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.865 -9.692 1.520 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.041 4.041 3 C -0.188 4.188 4 C 0.021 3.979 5 C 0.062 3.938 6 H 0.026 0.974 7 C -0.182 4.182 8 C -0.560 4.560 9 H 0.062 0.938 10 C -0.179 4.179 11 N -0.551 5.551 12 Si 0.783 3.217 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.203 1.203 16 N -0.223 5.223 17 C -0.050 4.050 18 C -0.145 4.145 19 Cl -0.017 7.017 20 H 0.114 0.886 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.167 0.833 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.932 -9.653 1.566 13.938 hybrid contribution -0.270 0.290 -0.795 0.888 sum -10.203 -9.362 0.772 13.869 Atomic orbital electron populations 1.20939 0.87006 1.04634 1.04406 1.20574 0.98928 0.90500 0.94147 1.22023 0.94116 0.99278 1.03382 1.22004 0.92490 0.93951 0.89452 1.17697 0.93124 0.86840 0.96126 0.97420 1.21696 0.99415 1.01064 0.95996 1.21062 1.35722 1.07540 0.91726 0.93759 1.25657 0.94708 0.96560 1.01016 1.69990 1.36380 1.16373 1.32370 0.85617 0.78553 0.77488 0.80049 1.19177 1.20455 1.20326 1.67701 1.41486 0.98550 1.14597 1.23125 0.90332 0.96887 0.94696 1.21915 0.93655 0.88135 1.10793 1.98322 1.77844 1.28511 1.97047 0.88608 0.89590 0.89729 0.83263 0.93452 0.95343 0.91604 0.92598 0.80477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 9.69 71.24 0.69 -1.73 15 2 C -0.03 -1.01 5.92 -19.65 -0.12 -1.13 15 3 C -0.17 -6.25 8.88 22.36 0.20 -6.05 15 4 C 0.16 7.05 5.73 42.54 0.24 7.29 15 5 C 0.08 4.22 2.61 -12.29 -0.03 4.19 15 6 H 0.01 0.45 8.14 -2.39 -0.02 0.43 15 7 C -0.12 -5.81 8.39 71.98 0.60 -5.20 15 8 C -0.52 -29.07 8.55 25.60 0.22 -28.85 15 9 H 0.04 2.49 7.74 -2.91 -0.02 2.46 15 10 C 0.02 1.10 5.30 84.65 0.45 1.55 15 11 N -0.91 -51.95 11.32 21.45 0.24 -51.71 15 12 Si 0.96 43.41 29.54 68.60 2.03 45.43 15 13 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 14 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 16 N -0.51 -22.47 10.27 -183.79 -1.89 -24.36 15 17 C 0.11 3.73 10.99 84.71 0.93 4.66 15 18 C -0.12 -3.52 6.34 22.42 0.14 -3.37 15 19 Cl -0.05 -1.08 27.48 -2.72 -0.07 -1.15 15 20 H 0.10 1.72 8.14 -2.39 -0.02 1.70 15 21 H 0.09 1.66 8.10 -2.38 -0.02 1.64 15 22 H 0.08 1.62 7.03 -2.39 -0.02 1.60 15 23 H 0.15 5.20 6.31 -2.91 -0.02 5.19 15 24 H 0.05 2.02 6.49 -2.39 -0.02 2.01 15 25 H 0.03 1.18 8.14 -2.38 -0.02 1.17 15 26 H 0.07 3.43 6.07 -2.39 -0.01 3.41 15 27 H 0.26 14.29 8.31 -92.70 -0.77 13.52 15 28 H 0.18 4.98 8.06 -2.91 -0.02 4.96 15 Total: -1.00 -61.45 254.87 4.80 -56.65 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.16 Total: 3.78 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 3.33 Total: -28.64 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.65 Total: -76.07 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.07 Total: -1.15 kcal Total: -61.45 4.80 -56.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022361.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.786 kcal (2) G-P(sol) polarization free energy of solvation -61.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds