Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46892 * 111.00189 * 2 1 4 4 H 1.09008 * 109.47111 * 184.02797 * 3 2 1 5 5 C 1.50698 * 109.47212 * 304.02584 * 3 2 1 6 6 H 1.08004 * 120.00087 * 115.83718 * 5 3 2 7 7 C 1.37876 * 120.00147 * 295.84113 * 5 3 2 8 8 N 1.31515 * 119.99802 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00154 * 179.72381 * 7 5 3 10 10 H 1.48503 * 109.47219 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47432 * 119.99646 * 9 7 5 12 12 H 1.48500 * 109.47137 * 239.99887 * 9 7 5 13 13 C 1.50700 * 109.47487 * 64.02776 * 3 2 1 14 14 C 1.38234 * 120.00841 * 258.53530 * 13 3 2 15 15 C 1.38223 * 120.01773 * 179.97438 * 14 13 3 16 16 C 1.38265 * 120.02216 * 0.04299 * 15 14 13 17 17 C 1.38194 * 120.01193 * 359.97412 * 16 15 14 18 18 C 1.38331 * 120.00480 * 78.25710 * 13 3 2 19 19 Cl 1.73594 * 120.01695 * 359.97438 * 18 13 3 20 20 H 1.08993 * 109.47332 * 175.15948 * 1 2 3 21 21 H 1.08998 * 109.47259 * 295.16256 * 1 2 3 22 22 H 1.09000 * 109.46567 * 55.16181 * 1 2 3 23 23 H 1.00909 * 110.99349 * 123.95433 * 2 1 3 24 24 H 0.97006 * 119.99631 * 180.02562 * 8 7 5 25 25 H 1.08000 * 119.99033 * 359.97438 * 14 13 3 26 26 H 1.07991 * 119.98828 * 180.02562 * 15 14 13 27 27 H 1.07992 * 119.99335 * 179.97438 * 16 15 14 28 28 H 1.08003 * 120.00358 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 3.0828 1.3431 -0.0722 5 6 1.4333 2.1253 -1.1775 6 1 0.7893 2.9770 -1.0158 7 6 1.7411 1.7277 -2.4613 8 7 2.5258 0.6907 -2.6583 9 14 1.0381 2.6574 -3.9210 10 1 0.1861 3.7721 -3.4341 11 1 2.1487 3.2046 -4.7410 12 1 0.2200 1.7346 -4.7482 13 6 1.5947 2.0634 1.2773 14 6 0.5390 2.9558 1.2782 15 6 0.1709 3.5903 2.4497 16 6 0.8589 3.3334 3.6212 17 6 1.9146 2.4417 3.6215 18 6 2.2795 1.8013 2.4503 19 17 3.6002 0.6748 2.4517 20 1 -0.3633 -1.0239 -0.0867 21 1 -0.3634 0.4369 0.9301 22 1 -0.3632 0.5871 -0.8435 23 1 1.8306 -0.5262 0.7815 24 1 2.7426 0.4113 -3.5615 25 1 0.0018 3.1574 0.3632 26 1 -0.6541 4.2871 2.4500 27 1 0.5711 3.8296 4.5362 28 1 2.4517 2.2408 4.5367 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261045934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = 23.923732 kcal Electronic energy + Delta-G solvation = -13514.588887 eV Core-core repulsion = 11170.411545 eV Total energy + Delta-G solvation = -2344.177342 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.00761 -35.85890 -35.36281 -31.90002 -30.45256 -30.11585 -26.56663 -24.65360 -22.36286 -21.93038 -19.88361 -16.66027 -16.26081 -14.90720 -14.88854 -14.38256 -14.14962 -13.49601 -13.24687 -12.87685 -12.49082 -11.98297 -11.62298 -11.08669 -11.02907 -10.93447 -10.72059 -10.67172 -10.36877 -10.12258 -9.77763 -8.96074 -8.45359 -8.30636 -8.07060 -6.90029 -5.92258 -4.04424 1.68948 1.85621 2.72442 3.30604 3.39455 3.40534 4.19959 4.44154 5.26022 5.32350 5.37080 5.54314 5.86834 5.94939 6.00613 6.27833 6.46184 6.50829 6.61771 6.76495 6.89860 6.99310 7.14789 7.38298 7.61188 7.86175 8.13116 8.53865 8.84258 9.12008 9.62601 11.13938 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.010633 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.392572 B = 2632.613729 C = 3082.751615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.648 5.648 3 C 0.247 3.753 4 H 0.062 0.938 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.084 3.916 8 N -0.846 5.846 9 Si 0.881 3.119 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.072 4.072 14 C -0.092 4.092 15 C -0.128 4.128 16 C -0.132 4.132 17 C -0.122 4.122 18 C -0.045 4.045 19 Cl -0.078 7.078 20 H 0.035 0.965 21 H -0.007 1.007 22 H 0.075 0.925 23 H 0.303 0.697 24 H 0.257 0.743 25 H 0.143 0.857 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 2.633 9.685 10.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.275 5.275 3 C 0.139 3.861 4 H 0.079 0.921 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.123 4.123 8 N -0.481 5.481 9 Si 0.709 3.291 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.075 4.075 14 C -0.110 4.110 15 C -0.147 4.147 16 C -0.151 4.151 17 C -0.141 4.141 18 C -0.072 4.072 19 Cl -0.049 7.049 20 H 0.053 0.947 21 H 0.012 0.988 22 H 0.094 0.906 23 H 0.118 0.882 24 H 0.067 0.933 25 H 0.161 0.839 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.316 2.297 8.831 9.414 hybrid contribution -0.462 0.669 0.174 0.831 sum -2.778 2.966 9.005 9.879 Atomic orbital electron populations 1.21947 0.90411 0.98924 0.99266 1.60935 1.05842 1.14882 1.45823 1.18395 0.97139 0.84103 0.86421 0.92061 1.21015 1.32472 1.13876 0.90078 0.91979 1.24937 0.94534 0.94346 0.98511 1.70093 1.33719 1.23670 1.20613 0.86738 0.79065 0.79954 0.83359 1.19855 1.21041 1.21038 1.21599 0.93392 0.95569 0.96979 1.21497 0.96471 0.94840 0.98216 1.21283 0.99956 1.00220 0.93200 1.20884 0.96680 0.99360 0.98174 1.20895 0.98510 0.98066 0.96607 1.21013 0.93492 0.97141 0.95559 1.98334 1.47168 1.60643 1.98739 0.94657 0.98817 0.90617 0.88153 0.93348 0.83942 0.86477 0.86340 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 9.99 60.07 0.60 1.57 15 2 N -0.65 -15.41 6.37 -116.50 -0.74 -16.15 15 3 C 0.25 6.01 1.97 -70.02 -0.14 5.88 15 4 H 0.06 1.67 7.44 -51.92 -0.39 1.29 15 5 C -0.54 -13.99 6.47 -34.44 -0.22 -14.22 15 6 H 0.06 1.57 5.30 -52.48 -0.28 1.29 15 7 C 0.08 2.26 5.41 -17.82 -0.10 2.17 15 8 N -0.85 -24.18 12.96 55.43 0.72 -23.46 15 9 Si 0.88 20.69 29.54 -169.99 -5.02 15.67 15 10 H -0.27 -6.29 7.11 56.52 0.40 -5.88 15 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 13 C -0.07 -1.52 4.32 -104.59 -0.45 -1.97 15 14 C -0.09 -1.77 8.35 -39.59 -0.33 -2.10 15 15 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 15 16 C -0.13 -1.97 10.05 -39.59 -0.40 -2.37 15 17 C -0.12 -1.97 9.83 -39.55 -0.39 -2.35 15 18 C -0.04 -0.85 6.31 -39.50 -0.25 -1.10 15 19 Cl -0.08 -1.41 26.61 -51.86 -1.38 -2.79 15 20 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 21 H -0.01 -0.14 6.97 -51.93 -0.36 -0.50 15 22 H 0.08 1.77 6.79 -51.93 -0.35 1.42 15 23 H 0.30 6.74 7.85 -39.29 -0.31 6.43 15 24 H 0.26 7.01 8.31 -40.82 -0.34 6.68 15 25 H 0.14 2.85 5.69 -52.49 -0.30 2.55 15 26 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 27 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 28 H 0.12 1.65 8.06 -52.48 -0.42 1.23 15 LS Contribution 250.19 15.07 3.77 3.77 Total: -1.00 -28.14 250.19 -7.54 -35.68 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -2.81 Total: 4.24 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.07 Total: -16.94 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: -0.02 Total: -39.62 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.38 Total: -2.79 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.14 -7.54 -35.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.599 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds