Wall clock time and date at job start Mon Mar 30 2020 02:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46892 * 111.00189 * 2 1 4 4 H 1.09008 * 109.47111 * 184.02797 * 3 2 1 5 5 C 1.50698 * 109.47212 * 304.02584 * 3 2 1 6 6 H 1.08004 * 120.00087 * 115.83718 * 5 3 2 7 7 C 1.37876 * 120.00147 * 295.84113 * 5 3 2 8 8 N 1.31515 * 119.99802 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00154 * 179.72381 * 7 5 3 10 10 H 1.48503 * 109.47219 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47432 * 119.99646 * 9 7 5 12 12 H 1.48500 * 109.47137 * 239.99887 * 9 7 5 13 13 C 1.50700 * 109.47487 * 64.02776 * 3 2 1 14 14 C 1.38234 * 120.00841 * 258.53530 * 13 3 2 15 15 C 1.38223 * 120.01773 * 179.97438 * 14 13 3 16 16 C 1.38265 * 120.02216 * 0.04299 * 15 14 13 17 17 C 1.38194 * 120.01193 * 359.97412 * 16 15 14 18 18 C 1.38331 * 120.00480 * 78.25710 * 13 3 2 19 19 Cl 1.73594 * 120.01695 * 359.97438 * 18 13 3 20 20 H 1.08993 * 109.47332 * 175.15948 * 1 2 3 21 21 H 1.08998 * 109.47259 * 295.16256 * 1 2 3 22 22 H 1.09000 * 109.46567 * 55.16181 * 1 2 3 23 23 H 1.00909 * 110.99349 * 123.95433 * 2 1 3 24 24 H 0.97006 * 119.99631 * 180.02562 * 8 7 5 25 25 H 1.08000 * 119.99033 * 359.97438 * 14 13 3 26 26 H 1.07991 * 119.98828 * 180.02562 * 15 14 13 27 27 H 1.07992 * 119.99335 * 179.97438 * 16 15 14 28 28 H 1.08003 * 120.00358 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 3.0828 1.3431 -0.0722 5 6 1.4333 2.1253 -1.1775 6 1 0.7893 2.9770 -1.0158 7 6 1.7411 1.7277 -2.4613 8 7 2.5258 0.6907 -2.6583 9 14 1.0381 2.6574 -3.9210 10 1 0.1861 3.7721 -3.4341 11 1 2.1487 3.2046 -4.7410 12 1 0.2200 1.7346 -4.7482 13 6 1.5947 2.0634 1.2773 14 6 0.5390 2.9558 1.2782 15 6 0.1709 3.5903 2.4497 16 6 0.8589 3.3334 3.6212 17 6 1.9146 2.4417 3.6215 18 6 2.2795 1.8013 2.4503 19 17 3.6002 0.6748 2.4517 20 1 -0.3633 -1.0239 -0.0867 21 1 -0.3634 0.4369 0.9301 22 1 -0.3632 0.5871 -0.8435 23 1 1.8306 -0.5262 0.7815 24 1 2.7426 0.4113 -3.5615 25 1 0.0018 3.1574 0.3632 26 1 -0.6541 4.2871 2.4500 27 1 0.5711 3.8296 4.5362 28 1 2.4517 2.2408 4.5367 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261045934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:57 Heat of formation + Delta-G solvation = 6.289389 kcal Electronic energy + Delta-G solvation = -13515.353569 eV Core-core repulsion = 11170.411545 eV Total energy + Delta-G solvation = -2344.942024 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.44015 -37.27088 -37.07316 -33.91659 -31.94062 -31.49092 -28.38271 -26.49541 -23.95845 -23.33918 -21.54488 -18.26526 -17.96686 -16.62841 -16.49714 -16.06140 -15.67813 -15.15088 -14.62384 -14.44904 -14.18374 -13.69208 -13.32376 -12.79074 -12.56810 -12.45261 -12.36852 -12.30409 -12.06998 -11.77190 -11.51205 -10.88540 -10.49275 -9.68570 -9.49705 -8.68839 -7.97430 -6.13901 0.34097 0.50523 1.32812 1.43099 1.45825 1.54839 2.47593 2.84032 3.29719 4.03700 4.07475 4.14688 4.29018 4.55840 4.61846 4.75966 4.86043 4.95992 5.14226 5.24804 5.40823 5.45930 5.56103 5.75825 5.88798 6.03621 6.20765 6.66313 6.93036 7.24177 7.56269 9.09166 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.010633 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.392572 B = 2632.613729 C = 3082.751615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.667 5.667 3 C 0.254 3.746 4 H 0.021 0.979 5 C -0.539 4.539 6 H 0.067 0.933 7 C 0.033 3.967 8 N -0.886 5.886 9 Si 0.943 3.057 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.102 4.102 14 C -0.110 4.110 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.060 4.060 19 Cl -0.083 7.083 20 H 0.050 0.950 21 H 0.005 0.995 22 H 0.054 0.946 23 H 0.309 0.691 24 H 0.254 0.746 25 H 0.127 0.873 26 H 0.151 0.849 27 H 0.164 0.836 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.922 4.050 11.571 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.295 5.295 3 C 0.146 3.854 4 H 0.039 0.961 5 C -0.577 4.577 6 H 0.085 0.915 7 C -0.170 4.170 8 N -0.522 5.522 9 Si 0.769 3.231 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.106 4.106 14 C -0.128 4.128 15 C -0.138 4.138 16 C -0.134 4.134 17 C -0.137 4.137 18 C -0.087 4.087 19 Cl -0.054 7.054 20 H 0.069 0.931 21 H 0.024 0.976 22 H 0.072 0.928 23 H 0.125 0.875 24 H 0.063 0.937 25 H 0.144 0.856 26 H 0.169 0.831 27 H 0.181 0.819 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.661 3.730 10.728 11.934 hybrid contribution -0.058 0.266 -0.286 0.395 sum -3.719 3.996 10.442 11.783 Atomic orbital electron populations 1.21823 0.89244 0.99529 0.98852 1.60793 1.07019 1.15133 1.46536 1.17988 0.94652 0.84680 0.88052 0.96135 1.21396 1.31629 1.13802 0.90877 0.91543 1.25668 0.94984 0.95174 1.01151 1.70235 1.35581 1.25580 1.20827 0.85758 0.78284 0.78892 0.80129 1.18746 1.21148 1.21145 1.21249 0.95586 0.97468 0.96258 1.21424 0.96469 0.95692 0.99263 1.21618 1.00465 0.99563 0.92141 1.21406 0.94905 0.97782 0.99339 1.21284 0.98765 0.97265 0.96395 1.21165 0.93584 0.97868 0.96059 1.98326 1.47395 1.60920 1.98752 0.93107 0.97641 0.92751 0.87506 0.93698 0.85563 0.83127 0.81853 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.41 9.99 127.69 1.28 3.69 15 2 N -0.67 -32.41 6.37 -522.49 -3.33 -35.74 15 3 C 0.25 12.71 1.97 43.42 0.09 12.79 15 4 H 0.02 1.19 7.44 -2.38 -0.02 1.17 15 5 C -0.54 -28.70 6.47 25.60 0.17 -28.54 15 6 H 0.07 3.41 5.30 -2.91 -0.02 3.39 15 7 C 0.03 1.83 5.41 84.65 0.46 2.29 15 8 N -0.89 -52.18 12.96 21.45 0.28 -51.90 15 9 Si 0.94 43.21 29.54 68.60 2.03 45.23 15 10 H -0.26 -11.47 7.11 99.48 0.71 -10.77 15 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 15 12 H -0.29 -13.02 7.11 99.48 0.71 -12.31 15 13 C -0.10 -4.30 4.32 -19.84 -0.09 -4.38 15 14 C -0.11 -4.10 8.35 22.27 0.19 -3.91 15 15 C -0.12 -3.38 10.05 22.27 0.22 -3.16 15 16 C -0.12 -2.88 10.05 22.27 0.22 -2.66 15 17 C -0.12 -3.41 9.83 22.29 0.22 -3.19 15 18 C -0.06 -2.19 6.31 22.32 0.14 -2.05 15 19 Cl -0.08 -3.00 26.61 -2.72 -0.07 -3.07 15 20 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 21 H 0.01 0.21 6.97 -2.39 -0.02 0.20 15 22 H 0.05 2.57 6.79 -2.39 -0.02 2.55 15 23 H 0.31 14.04 7.85 -89.69 -0.70 13.33 15 24 H 0.25 14.33 8.31 -92.70 -0.77 13.56 15 25 H 0.13 5.02 5.69 -2.91 -0.02 5.01 15 26 H 0.15 3.21 8.06 -2.92 -0.02 3.19 15 27 H 0.16 2.67 8.06 -2.91 -0.02 2.65 15 28 H 0.15 3.42 8.06 -2.91 -0.02 3.40 15 Total: -1.00 -61.84 250.19 2.27 -59.57 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.47 Total: 15.04 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 2.89 Total: -29.13 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -3.05 Total: -87.64 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.07 Total: -3.07 kcal Total: -61.84 2.27 -59.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.858 kcal (2) G-P(sol) polarization free energy of solvation -61.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds