Wall clock time and date at job start Mon Mar 30 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38583 * 120.00056 * 2 1 4 4 C 1.39557 * 120.41497 * 0.27444 * 3 2 1 5 5 C 1.40534 * 118.23051 * 180.28198 * 4 3 2 6 6 C 1.41582 * 120.57550 * 179.71887 * 5 4 3 7 7 H 1.08002 * 120.00394 * 359.72901 * 6 5 4 8 8 C 1.40059 * 119.99983 * 179.44634 * 6 5 4 9 9 N 1.30704 * 119.99959 * 0.27958 * 8 6 5 10 10 Si 1.86798 * 120.00390 * 180.27394 * 8 6 5 11 11 H 1.48510 * 109.46922 * 89.99994 * 10 8 6 12 12 H 1.48501 * 109.47447 * 210.00351 * 10 8 6 13 13 H 1.48499 * 109.46902 * 330.00691 * 10 8 6 14 14 N 1.34180 * 118.84614 * 359.44686 * 5 4 3 15 15 C 1.32136 * 120.69807 * 0.27373 * 14 5 4 16 16 S 1.76205 * 119.01916 * 179.97438 * 15 14 5 17 17 C 1.81002 * 99.99786 * 179.97438 * 16 15 14 18 18 N 1.32758 * 121.95860 * 0.02562 * 15 14 5 19 19 H 1.08998 * 109.47069 * 60.00298 * 1 2 3 20 20 H 1.08997 * 109.46758 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46999 * 299.99915 * 1 2 3 22 22 H 0.97007 * 120.00076 * 180.02562 * 2 1 3 23 23 H 1.07993 * 120.88490 * 0.02562 * 4 3 2 24 24 H 0.96996 * 120.00349 * 179.97438 * 9 8 6 25 25 H 1.09006 * 109.47013 * 60.00761 * 17 16 15 26 26 H 1.08999 * 109.47157 * 180.02562 * 17 16 15 27 27 H 1.09002 * 109.47387 * 300.00471 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1579 1.2002 0.0000 4 6 1.4689 2.4138 0.0058 5 6 2.2175 3.6032 -0.0006 6 6 1.5694 4.8620 -0.0011 7 1 0.4906 4.9140 -0.0011 8 6 2.3273 6.0398 0.0042 9 7 3.6328 5.9769 0.0042 10 14 1.4723 7.7006 0.0112 11 1 1.2454 8.1346 1.4132 12 1 2.3239 8.6988 -0.6843 13 1 0.1679 7.5888 -0.6896 14 7 3.5570 3.5251 -0.0005 15 6 4.1643 2.3515 0.0000 16 16 5.9256 2.3005 -0.0007 17 6 6.1881 0.5097 0.0011 18 7 3.4869 1.2098 -0.0001 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.9500 -0.8401 -0.0004 23 1 0.3893 2.4383 0.0107 24 1 4.1577 6.7925 0.0075 25 1 5.7322 0.0747 -0.8883 26 1 7.2576 0.2992 0.0014 27 1 5.7327 0.0765 0.8917 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261066613.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:37 Heat of formation + Delta-G solvation = 41.776917 kcal Electronic energy + Delta-G solvation = -13115.781265 eV Core-core repulsion = 10806.714553 eV Total energy + Delta-G solvation = -2309.066712 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.82819 -35.32722 -33.77859 -31.18296 -29.56479 -28.30763 -26.15652 -25.66005 -22.33372 -21.32578 -17.91457 -17.03867 -15.98171 -14.93297 -14.65974 -14.00967 -13.85757 -13.56920 -13.32900 -13.17086 -12.87561 -12.44689 -11.90746 -11.75609 -11.33609 -11.17815 -10.68814 -10.22942 -10.08553 -9.84413 -9.54322 -8.89545 -8.40240 -7.50070 -7.36591 -6.56225 -6.45401 -4.73927 2.45493 2.63764 2.98768 3.07008 3.10297 3.12703 3.31963 3.90161 4.10932 4.74022 5.48098 5.68231 5.78380 5.82051 5.92622 6.03673 6.27406 6.40009 6.50733 6.78962 6.97398 7.15618 7.36756 7.83961 8.07308 8.34542 8.59140 8.79585 9.10196 10.02459 10.24398 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.010866 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.949108 B = 2576.325009 C = 3776.822138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.741 5.741 3 C 0.431 3.569 4 C -0.388 4.388 5 C 0.297 3.703 6 C -0.419 4.419 7 H 0.087 0.913 8 C 0.068 3.932 9 N -0.703 5.703 10 Si 0.911 3.089 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.261 1.261 14 N -0.508 5.508 15 C 0.332 3.668 16 S -0.050 6.050 17 C -0.132 4.132 18 N -0.666 5.666 19 H 0.048 0.952 20 H 0.063 0.937 21 H 0.048 0.952 22 H 0.392 0.608 23 H 0.105 0.895 24 H 0.277 0.723 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.051 -5.813 0.003 5.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.377 5.377 3 C 0.194 3.806 4 C -0.420 4.420 5 C 0.167 3.833 6 C -0.452 4.452 7 H 0.105 0.895 8 C -0.159 4.159 9 N -0.324 5.324 10 Si 0.735 3.265 11 H -0.193 1.193 12 H -0.200 1.200 13 H -0.185 1.185 14 N -0.233 5.233 15 C -0.050 4.050 16 S 0.181 5.819 17 C -0.302 4.302 18 N -0.402 5.402 19 H 0.066 0.934 20 H 0.082 0.918 21 H 0.066 0.934 22 H 0.225 0.775 23 H 0.123 0.877 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.735 -4.751 -0.001 4.807 hybrid contribution -2.220 -0.624 0.014 2.306 sum -1.485 -5.374 0.013 5.576 Atomic orbital electron populations 1.21323 0.80286 1.00847 1.01091 1.43879 1.04829 1.05205 1.83752 1.18047 0.88163 0.85512 0.88927 1.21629 0.99253 0.92378 1.28738 1.18505 0.86953 0.92117 0.85701 1.19613 0.94351 0.88863 1.42368 0.89459 1.26144 0.94833 1.01413 0.93504 1.70103 1.05697 1.29787 1.26816 0.86275 0.80261 0.80690 0.79323 1.19283 1.19952 1.18465 1.69418 1.10060 1.21931 1.21914 1.23854 0.98095 0.87473 0.95593 1.85319 0.97205 1.06126 1.93228 1.23262 1.03494 0.97321 1.06125 1.67762 1.06815 1.30472 1.35185 0.93369 0.91800 0.93372 0.77524 0.87673 0.91210 0.90253 0.89553 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.61 9.95 59.85 0.60 2.21 15 2 N -0.74 -13.72 5.87 -67.09 -0.39 -14.11 15 3 C 0.43 10.25 7.70 -154.84 -1.19 9.06 15 4 C -0.39 -9.90 9.17 -38.23 -0.35 -10.25 15 5 C 0.30 8.40 6.58 -84.70 -0.56 7.84 15 6 C -0.42 -11.29 9.19 -37.62 -0.35 -11.63 15 7 H 0.09 2.18 7.85 -52.49 -0.41 1.77 15 8 C 0.07 1.75 5.50 -17.35 -0.10 1.65 15 9 N -0.70 -18.95 11.52 55.55 0.64 -18.31 15 10 Si 0.91 18.46 29.56 -169.99 -5.02 13.43 15 11 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 12 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 13 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 14 N -0.51 -14.67 7.99 -11.45 -0.09 -14.76 15 15 C 0.33 8.71 7.85 -91.03 -0.71 7.99 15 16 S -0.05 -1.08 22.89 -107.50 -2.46 -3.54 15 17 C -0.13 -2.22 9.61 101.05 0.97 -1.25 15 18 N -0.67 -16.45 9.13 -12.73 -0.12 -16.57 15 19 H 0.05 0.72 7.98 -51.93 -0.41 0.30 15 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.05 0.72 7.96 -51.93 -0.41 0.30 15 22 H 0.39 6.48 8.95 -40.82 -0.37 6.11 15 23 H 0.11 2.46 6.85 -52.49 -0.36 2.10 15 24 H 0.28 6.72 8.29 -40.82 -0.34 6.39 15 25 H 0.08 1.36 8.11 -51.91 -0.42 0.94 15 26 H 0.09 1.15 8.14 -51.92 -0.42 0.73 15 27 H 0.08 1.36 8.11 -51.92 -0.42 0.93 15 LS Contribution 254.19 15.07 3.83 3.83 Total: -1.00 -31.21 254.19 -8.09 -39.31 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -2.79 Total: 5.09 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.69 Total: 5.63 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: 0.04 Total: -63.74 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.46 Total: -3.54 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.21 -8.09 -39.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066613.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.083 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds