Wall clock time and date at job start Mon Mar 30 2020 02:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46903 * 110.99914 * 2 1 4 4 H 1.08993 * 109.47404 * 32.86232 * 3 2 1 5 5 C 1.50702 * 109.47238 * 152.86625 * 3 2 1 6 6 H 1.07993 * 120.00330 * 119.99612 * 5 3 2 7 7 C 1.37874 * 119.99678 * 299.99873 * 5 3 2 8 8 N 1.31518 * 120.00477 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00042 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47337 * 89.99907 * 9 7 5 11 11 H 1.48507 * 109.47303 * 209.99790 * 9 7 5 12 12 H 1.48497 * 109.47176 * 329.99568 * 9 7 5 13 13 C 1.50705 * 109.46933 * 272.86021 * 3 2 1 14 14 C 1.38256 * 119.99707 * 315.46466 * 13 3 2 15 15 C 1.38225 * 120.02962 * 179.76532 * 14 13 3 16 16 C 1.38232 * 120.00724 * 0.51182 * 15 14 13 17 17 C 1.38336 * 119.99177 * 359.74432 * 16 15 14 18 18 Cl 1.73598 * 120.01376 * 180.02562 * 17 16 15 19 19 C 1.38193 * 119.99030 * 135.74009 * 13 3 2 20 20 H 1.09002 * 109.47304 * 184.53953 * 1 2 3 21 21 H 1.09005 * 109.47398 * 304.54147 * 1 2 3 22 22 H 1.09005 * 109.47268 * 64.54173 * 1 2 3 23 23 H 1.00904 * 111.00095 * 123.94903 * 2 1 3 24 24 H 0.96997 * 120.00475 * 180.02562 * 8 7 5 25 25 H 1.08004 * 119.98553 * 359.97438 * 14 13 3 26 26 H 1.08001 * 119.99328 * 180.25663 * 15 14 13 27 27 H 1.08001 * 120.00572 * 179.72135 * 16 15 14 28 28 H 1.08004 * 120.00695 * 0.02562 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 1.3197 2.0200 0.5576 5 6 3.3558 1.3873 0.6480 6 1 4.2167 1.7219 0.0883 7 6 3.5015 0.9747 1.9554 8 7 2.4531 0.5676 2.6373 9 14 5.1877 0.9950 2.7590 10 1 5.4097 2.3108 3.4106 11 1 5.2629 -0.0815 3.7792 12 1 6.2309 0.7717 1.7261 13 6 2.1091 1.8658 -1.4191 14 6 2.6427 1.0458 -2.3960 15 6 2.7430 1.4968 -3.6988 16 6 2.3194 2.7719 -4.0235 17 6 1.7903 3.5948 -3.0454 18 17 1.2576 5.1961 -3.4527 19 6 1.6853 3.1408 -1.7425 20 1 -0.3634 -1.0244 0.0813 21 1 -0.3634 0.5827 0.8465 22 1 -0.3634 0.4418 -0.9279 23 1 1.8305 -0.5261 0.7814 24 1 2.5555 0.2777 3.5572 25 1 2.9783 0.0512 -2.1418 26 1 3.1561 0.8542 -4.4623 27 1 2.4019 3.1259 -5.0405 28 1 1.2730 3.7830 -0.9783 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261109437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:00 Heat of formation + Delta-G solvation = 9.091309 kcal Electronic energy + Delta-G solvation = -13155.452095 eV Core-core repulsion = 10810.631571 eV Total energy + Delta-G solvation = -2344.820524 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.77601 -36.19922 -35.18871 -32.05828 -30.66827 -29.98816 -27.00024 -23.81008 -22.72322 -21.92648 -19.89443 -16.76135 -16.24817 -15.10458 -14.82576 -14.59726 -13.86671 -13.32956 -13.07224 -12.86164 -12.63374 -12.24780 -11.62327 -11.31591 -11.02407 -10.95328 -10.88663 -10.74545 -10.49733 -10.42301 -9.70595 -9.39818 -8.80960 -8.25207 -7.92693 -7.11110 -6.23832 -4.31424 1.83402 1.95479 2.56347 3.21984 3.29285 3.33529 4.24850 4.40164 5.02935 5.36690 5.42770 5.82202 5.95150 6.02888 6.14433 6.29476 6.36669 6.55272 6.61559 6.72298 6.82804 7.02674 7.11431 7.47447 7.50711 7.73999 7.92900 8.52595 8.77027 9.00857 9.36503 10.82701 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.029597 B = 0.008127 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.812327 B = 3444.282499 C = 3708.642839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.686 5.686 3 C 0.241 3.759 4 H 0.016 0.984 5 C -0.511 4.511 6 H 0.063 0.937 7 C 0.065 3.935 8 N -0.897 5.897 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.271 1.271 13 C -0.017 4.017 14 C -0.084 4.084 15 C -0.121 4.121 16 C -0.138 4.138 17 C -0.038 4.038 18 Cl -0.097 7.097 19 C -0.119 4.119 20 H 0.043 0.957 21 H 0.014 0.986 22 H 0.040 0.960 23 H 0.362 0.638 24 H 0.267 0.733 25 H 0.133 0.867 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 2.271 -8.494 8.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.321 5.321 3 C 0.133 3.867 4 H 0.033 0.967 5 C -0.550 4.550 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.536 5.536 9 Si 0.730 3.270 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 C -0.018 4.018 14 C -0.103 4.103 15 C -0.140 4.140 16 C -0.156 4.156 17 C -0.064 4.064 18 Cl -0.068 7.068 19 C -0.138 4.138 20 H 0.062 0.938 21 H 0.032 0.968 22 H 0.059 0.941 23 H 0.185 0.815 24 H 0.076 0.924 25 H 0.150 0.850 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.495 2.258 -9.018 9.415 hybrid contribution 0.546 0.499 1.398 1.582 sum -0.949 2.757 -7.619 8.158 Atomic orbital electron populations 1.22032 0.91724 0.99192 0.98601 1.60783 1.04342 1.16148 1.50780 1.18134 0.95764 0.87072 0.85707 0.96693 1.21185 0.93198 1.43955 0.96673 0.91846 1.25048 0.97362 0.94429 0.96890 1.69808 1.29154 1.43874 1.10744 0.86419 0.83761 0.77785 0.79081 1.20552 1.21072 1.19616 1.20536 0.91924 0.91464 0.97918 1.21176 0.97108 1.00576 0.91416 1.21078 1.00775 0.95068 0.97051 1.20775 1.02185 0.94477 0.98213 1.20808 1.04207 0.86156 0.95216 1.98314 1.89385 1.25000 1.94105 1.20986 1.01964 0.96945 0.93943 0.93787 0.96759 0.94102 0.81550 0.92363 0.84951 0.86168 0.86276 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.54 60.06 0.63 1.36 15 2 N -0.69 -15.83 6.03 -116.49 -0.70 -16.54 15 3 C 0.24 5.84 2.11 -70.01 -0.15 5.69 15 4 H 0.02 0.41 7.51 -51.93 -0.39 0.02 15 5 C -0.51 -13.38 8.61 -34.44 -0.30 -13.68 15 6 H 0.06 1.67 7.74 -52.49 -0.41 1.27 15 7 C 0.07 1.70 5.11 -17.82 -0.09 1.61 15 8 N -0.90 -24.02 11.80 55.43 0.65 -23.37 15 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 15 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 13 C -0.02 -0.37 4.80 -104.63 -0.50 -0.87 15 14 C -0.08 -1.63 9.28 -39.58 -0.37 -2.00 15 15 C -0.12 -1.99 10.05 -39.59 -0.40 -2.39 15 16 C -0.14 -2.22 9.83 -39.55 -0.39 -2.60 15 17 C -0.04 -0.66 6.32 -39.50 -0.25 -0.91 15 18 Cl -0.10 -1.49 28.96 -51.86 -1.50 -2.99 15 19 C -0.12 -2.35 9.45 -39.55 -0.37 -2.72 15 20 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.01 0.30 7.94 -51.93 -0.41 -0.11 15 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.36 9.06 6.53 -39.29 -0.26 8.80 15 24 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 25 H 0.13 2.61 7.86 -52.48 -0.41 2.19 15 26 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 27 H 0.12 1.62 8.06 -52.49 -0.42 1.19 15 28 H 0.12 2.40 8.01 -52.48 -0.42 1.98 15 LS Contribution 260.04 15.07 3.92 3.92 Total: -1.00 -26.01 260.04 -7.96 -33.96 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -3.12 Total: 6.11 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -2.18 Total: -16.50 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: -0.05 Total: -39.90 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -1.50 Total: -2.99 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.01 -7.96 -33.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.056 kcal (2) G-P(sol) polarization free energy of solvation -26.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds