Wall clock time and date at job start Mon Mar 30 2020 02:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46903 * 110.99914 * 2 1 4 4 H 1.08993 * 109.47404 * 32.86232 * 3 2 1 5 5 C 1.50702 * 109.47238 * 152.86625 * 3 2 1 6 6 H 1.07993 * 120.00330 * 119.99612 * 5 3 2 7 7 C 1.37874 * 119.99678 * 299.99873 * 5 3 2 8 8 N 1.31518 * 120.00477 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00042 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47337 * 89.99907 * 9 7 5 11 11 H 1.48507 * 109.47303 * 209.99790 * 9 7 5 12 12 H 1.48497 * 109.47176 * 329.99568 * 9 7 5 13 13 C 1.50705 * 109.46933 * 272.86021 * 3 2 1 14 14 C 1.38256 * 119.99707 * 315.46466 * 13 3 2 15 15 C 1.38225 * 120.02962 * 179.76532 * 14 13 3 16 16 C 1.38232 * 120.00724 * 0.51182 * 15 14 13 17 17 C 1.38336 * 119.99177 * 359.74432 * 16 15 14 18 18 Cl 1.73598 * 120.01376 * 180.02562 * 17 16 15 19 19 C 1.38193 * 119.99030 * 135.74009 * 13 3 2 20 20 H 1.09002 * 109.47304 * 184.53953 * 1 2 3 21 21 H 1.09005 * 109.47398 * 304.54147 * 1 2 3 22 22 H 1.09005 * 109.47268 * 64.54173 * 1 2 3 23 23 H 1.00904 * 111.00095 * 123.94903 * 2 1 3 24 24 H 0.96997 * 120.00475 * 180.02562 * 8 7 5 25 25 H 1.08004 * 119.98553 * 359.97438 * 14 13 3 26 26 H 1.08001 * 119.99328 * 180.25663 * 15 14 13 27 27 H 1.08001 * 120.00572 * 179.72135 * 16 15 14 28 28 H 1.08004 * 120.00695 * 0.02562 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 1.3197 2.0200 0.5576 5 6 3.3558 1.3873 0.6480 6 1 4.2167 1.7219 0.0883 7 6 3.5015 0.9747 1.9554 8 7 2.4531 0.5676 2.6373 9 14 5.1877 0.9950 2.7590 10 1 5.4097 2.3108 3.4106 11 1 5.2629 -0.0815 3.7792 12 1 6.2309 0.7717 1.7261 13 6 2.1091 1.8658 -1.4191 14 6 2.6427 1.0458 -2.3960 15 6 2.7430 1.4968 -3.6988 16 6 2.3194 2.7719 -4.0235 17 6 1.7903 3.5948 -3.0454 18 17 1.2576 5.1961 -3.4527 19 6 1.6853 3.1408 -1.7425 20 1 -0.3634 -1.0244 0.0813 21 1 -0.3634 0.5827 0.8465 22 1 -0.3634 0.4418 -0.9279 23 1 1.8305 -0.5261 0.7814 24 1 2.5555 0.2777 3.5572 25 1 2.9783 0.0512 -2.1418 26 1 3.1561 0.8542 -4.4623 27 1 2.4019 3.1259 -5.0405 28 1 1.2730 3.7830 -0.9783 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:00 Heat of formation + Delta-G solvation = -5.535331 kcal Electronic energy + Delta-G solvation = -13156.086353 eV Core-core repulsion = 10810.631571 eV Total energy + Delta-G solvation = -2345.454783 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.24915 -37.63431 -36.83673 -34.01726 -32.19888 -31.42801 -28.81217 -25.66931 -24.35818 -23.34991 -21.52953 -18.69146 -17.74211 -16.86673 -16.35227 -16.14404 -15.66273 -14.89024 -14.64492 -14.29841 -14.23083 -14.04087 -13.34938 -12.98280 -12.82442 -12.49313 -12.39669 -12.27701 -12.08287 -11.94520 -11.37814 -11.28700 -10.80385 -9.68988 -9.40226 -8.97963 -8.22444 -6.37822 0.40495 0.53039 1.21853 1.41570 1.43718 1.54086 2.38840 2.89728 3.04489 3.95051 4.06673 4.23365 4.41534 4.58791 4.64513 4.67471 4.79011 4.97880 5.02795 5.13933 5.21084 5.39229 5.58264 5.69830 5.91061 5.94078 6.12242 6.61000 6.80519 7.06333 7.33347 8.82510 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.029597 B = 0.008127 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.812327 B = 3444.282499 C = 3708.642839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.683 5.683 3 C 0.246 3.754 4 H -0.024 1.024 5 C -0.529 4.529 6 H 0.055 0.945 7 C 0.023 3.977 8 N -0.920 5.920 9 Si 0.963 3.037 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.268 1.268 13 C -0.044 4.044 14 C -0.097 4.097 15 C -0.107 4.107 16 C -0.126 4.126 17 C -0.040 4.040 18 Cl -0.077 7.077 19 C -0.135 4.135 20 H 0.067 0.933 21 H -0.005 1.005 22 H 0.050 0.950 23 H 0.349 0.651 24 H 0.268 0.732 25 H 0.123 0.877 26 H 0.160 0.840 27 H 0.155 0.845 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 2.325 -10.399 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.315 5.315 3 C 0.138 3.862 4 H -0.007 1.007 5 C -0.567 4.567 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.559 5.559 9 Si 0.789 3.211 10 H -0.205 1.205 11 H -0.205 1.205 12 H -0.192 1.192 13 C -0.045 4.045 14 C -0.115 4.115 15 C -0.125 4.125 16 C -0.145 4.145 17 C -0.067 4.067 18 Cl -0.048 7.048 19 C -0.154 4.154 20 H 0.086 0.914 21 H 0.014 0.986 22 H 0.069 0.931 23 H 0.169 0.831 24 H 0.077 0.923 25 H 0.141 0.859 26 H 0.177 0.823 27 H 0.173 0.827 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.779 2.320 -10.940 11.210 hybrid contribution 0.267 0.541 1.917 2.009 sum -0.512 2.862 -9.023 9.480 Atomic orbital electron populations 1.22039 0.90251 1.00416 0.98292 1.60826 1.05702 1.15292 1.49691 1.17941 0.94057 0.86790 0.87435 1.00678 1.21410 0.93886 1.44162 0.97241 0.92684 1.25754 1.00598 0.94022 0.97321 1.69906 1.30789 1.44324 1.10919 0.85468 0.79819 0.77699 0.78139 1.20495 1.20473 1.19214 1.20293 0.94622 0.92769 0.96792 1.21171 0.97719 1.00084 0.92573 1.21429 0.99165 0.95562 0.96329 1.21202 1.00050 0.93842 0.99371 1.20901 1.03829 0.87325 0.94597 1.98320 1.89156 1.23541 1.93803 1.20922 1.02919 0.96491 0.95097 0.91426 0.98603 0.93098 0.83112 0.92287 0.85857 0.82281 0.82735 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 10.54 127.69 1.35 3.02 15 2 N -0.68 -32.26 6.03 -522.48 -3.15 -35.41 15 3 C 0.25 12.36 2.11 43.42 0.09 12.45 15 4 H -0.02 -1.37 7.51 -2.39 -0.02 -1.39 15 5 C -0.53 -28.41 8.61 25.60 0.22 -28.19 15 6 H 0.05 2.97 7.74 -2.91 -0.02 2.95 15 7 C 0.02 1.22 5.11 84.65 0.43 1.66 15 8 N -0.92 -50.41 11.80 21.45 0.25 -50.16 15 9 Si 0.96 42.25 29.54 68.60 2.03 44.28 15 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 13 C -0.04 -1.88 4.80 -19.87 -0.10 -1.98 15 14 C -0.10 -3.66 9.28 22.27 0.21 -3.46 15 15 C -0.11 -3.15 10.05 22.27 0.22 -2.92 15 16 C -0.13 -3.60 9.83 22.29 0.22 -3.38 15 17 C -0.04 -1.33 6.32 22.33 0.14 -1.19 15 18 Cl -0.08 -2.21 28.96 -2.72 -0.08 -2.29 15 19 C -0.13 -5.35 9.45 22.29 0.21 -5.13 15 20 H 0.07 2.44 8.14 -2.39 -0.02 2.43 15 21 H 0.00 -0.21 7.94 -2.38 -0.02 -0.23 15 22 H 0.05 1.98 8.14 -2.38 -0.02 1.96 15 23 H 0.35 17.91 6.53 -89.69 -0.59 17.33 15 24 H 0.27 13.96 8.31 -92.71 -0.77 13.19 15 25 H 0.12 4.81 7.86 -2.91 -0.02 4.79 15 26 H 0.16 3.45 8.06 -2.91 -0.02 3.42 15 27 H 0.16 3.36 8.06 -2.91 -0.02 3.34 15 28 H 0.11 4.54 8.01 -2.91 -0.02 4.52 15 Total: -1.00 -56.43 260.04 2.62 -53.81 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.57 Total: 18.89 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 3.00 Total: -29.11 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -2.90 Total: -85.57 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.08 Total: -2.29 kcal Total: -56.43 2.62 -53.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.271 kcal (2) G-P(sol) polarization free energy of solvation -56.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds