Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38777 * 120.79368 * 2 1 4 4 Cl 1.73602 * 120.43294 * 359.94858 * 3 2 1 5 5 C 1.38312 * 119.13927 * 179.97438 * 3 2 1 6 6 N 1.31870 * 120.74301 * 359.97062 * 5 3 2 7 7 C 1.31855 * 121.74007 * 359.77557 * 6 5 3 8 8 C 1.38229 * 120.78957 * 0.49571 * 7 6 5 9 9 C 1.50703 * 120.41267 * 179.77508 * 8 7 6 10 10 H 1.08994 * 109.47874 * 179.71891 * 9 8 7 11 11 C 1.53003 * 109.47211 * 59.71340 * 9 8 7 12 12 C 1.50708 * 109.46925 * 299.71710 * 9 8 7 13 13 H 1.07991 * 119.99789 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00008 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 9 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 H 1.09001 * 109.47649 * 270.02408 * 1 2 3 21 21 H 1.08998 * 109.47294 * 30.03317 * 1 2 3 22 22 H 1.09006 * 109.46745 * 150.02407 * 1 2 3 23 23 H 1.07996 * 119.62898 * 179.97438 * 5 3 2 24 24 H 1.08000 * 119.60397 * 180.26506 * 7 6 5 25 25 H 1.08996 * 109.47696 * 300.00475 * 11 9 8 26 26 H 1.08998 * 109.46607 * 60.00472 * 11 9 8 27 27 H 1.09003 * 109.47241 * 180.02562 * 11 9 8 28 28 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1921 0.0000 4 17 1.3818 2.7138 -0.0013 5 6 3.6000 1.1522 0.0005 6 7 4.2411 -0.0002 0.0016 7 6 3.5984 -1.1515 0.0066 8 6 2.2167 -1.1906 0.0007 9 6 1.4908 -2.5113 0.0014 10 1 0.4153 -2.3349 0.0012 11 6 1.8773 -3.3050 1.2511 12 6 1.8716 -3.2944 -1.2287 13 1 2.5696 -2.8776 -1.9395 14 6 1.3295 -4.5433 -1.4460 15 7 1.6622 -5.2269 -2.5192 16 14 0.1227 -5.2646 -0.2161 17 1 0.8654 -6.0389 0.8106 18 1 -0.8267 -6.1621 -0.9221 19 1 -0.6303 -4.1662 0.4411 20 1 -0.3634 0.0004 1.0276 21 1 -0.3634 0.8897 -0.5143 22 1 -0.3633 -0.8903 -0.5135 23 1 4.1608 2.0751 0.0001 24 1 4.1583 -2.0750 0.0117 25 1 2.9528 -3.4815 1.2513 26 1 1.6018 -2.7386 2.1407 27 1 1.3526 -4.2604 1.2513 28 1 1.2805 -6.1054 -2.6722 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261205946.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = 17.852196 kcal Electronic energy + Delta-G solvation = -13322.423969 eV Core-core repulsion = 10977.983345 eV Total energy + Delta-G solvation = -2344.440623 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.01299 -36.45003 -35.25513 -33.09065 -31.67963 -29.33865 -27.39034 -25.21983 -23.61496 -21.82282 -19.96628 -17.15851 -16.22078 -16.00802 -15.30334 -14.68538 -14.13474 -13.42049 -13.04759 -12.68975 -12.57229 -12.41303 -12.29190 -11.79743 -11.69947 -11.24856 -11.06808 -10.96755 -10.48457 -10.21014 -9.59970 -9.42619 -8.96920 -8.78369 -8.68641 -8.25512 -6.18918 -4.20706 1.39075 1.63432 2.28625 3.18667 3.28110 3.31724 4.13101 4.29244 4.83467 5.00150 5.11363 5.19844 5.35649 5.69873 5.84621 5.88031 5.94714 6.21775 6.28480 6.34253 6.39055 6.50365 6.69261 6.83635 7.08339 7.29593 7.56447 8.29211 8.37752 8.83616 9.40580 10.93589 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039726 B = 0.008503 C = 0.007855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.664437 B = 3292.000925 C = 3563.795630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.046 4.046 3 C -0.091 4.091 4 Cl -0.074 7.074 5 C 0.087 3.913 6 N -0.478 5.478 7 C 0.112 3.888 8 C -0.064 4.064 9 C 0.039 3.961 10 H 0.046 0.954 11 C -0.146 4.146 12 C -0.516 4.516 13 H 0.077 0.923 14 C 0.075 3.925 15 N -0.894 5.894 16 Si 0.887 3.113 17 H -0.277 1.277 18 H -0.296 1.296 19 H -0.266 1.266 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.154 0.846 24 H 0.165 0.835 25 H 0.056 0.944 26 H 0.031 0.969 27 H 0.045 0.955 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 10.414 6.756 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.055 4.055 3 C -0.120 4.120 4 Cl -0.046 7.046 5 C -0.071 4.071 6 N -0.187 5.187 7 C -0.045 4.045 8 C -0.066 4.066 9 C 0.020 3.980 10 H 0.064 0.936 11 C -0.203 4.203 12 C -0.553 4.553 13 H 0.095 0.905 14 C -0.128 4.128 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.224 1.224 19 H -0.191 1.191 20 H 0.092 0.908 21 H 0.089 0.911 22 H 0.106 0.894 23 H 0.171 0.829 24 H 0.182 0.818 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.700 10.380 6.640 12.342 hybrid contribution -1.556 -0.382 0.495 1.677 sum -2.256 9.998 7.135 12.488 Atomic orbital electron populations 1.20911 0.90053 1.04043 1.02751 1.20131 0.97304 0.90871 0.97169 1.21930 0.93797 0.86801 1.09465 1.98320 1.78724 1.30460 1.97096 1.22510 0.89235 0.96985 0.98363 1.67802 1.40134 0.98103 1.12639 1.22834 0.91966 0.95683 0.93968 1.21121 0.94772 0.95847 0.94860 1.18405 0.95943 0.88233 0.95401 0.93590 1.22181 1.01641 0.99325 0.97148 1.20883 1.28236 1.01101 1.05123 0.90527 1.24971 0.95960 0.96665 0.95202 1.69878 1.43693 1.12928 1.26585 0.86863 0.81255 0.79285 0.80902 1.20406 1.22366 1.19102 0.90806 0.91139 0.89385 0.82892 0.81801 0.92502 0.94986 0.93645 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.09 36.01 0.33 -1.55 15 2 C -0.05 -0.83 5.92 -104.29 -0.62 -1.44 15 3 C -0.09 -1.48 6.34 -39.35 -0.25 -1.73 15 4 Cl -0.07 -1.01 27.48 -51.86 -1.42 -2.44 15 5 C 0.09 1.41 10.99 -17.51 -0.19 1.22 15 6 N -0.48 -8.80 10.36 -13.22 -0.14 -8.93 15 7 C 0.11 2.17 9.91 -17.54 -0.17 2.00 15 8 C -0.06 -1.27 4.74 -104.49 -0.50 -1.76 15 9 C 0.04 0.86 1.90 -92.92 -0.18 0.68 15 10 H 0.05 1.00 4.67 -51.93 -0.24 0.76 15 11 C -0.15 -2.94 8.49 37.16 0.32 -2.62 15 12 C -0.52 -13.56 8.84 -34.44 -0.30 -13.86 15 13 H 0.08 2.23 7.86 -52.49 -0.41 1.81 15 14 C 0.07 2.04 5.45 -17.82 -0.10 1.94 15 15 N -0.89 -26.22 13.96 55.43 0.77 -25.44 15 16 Si 0.89 20.70 24.37 -169.99 -4.14 16.56 15 17 H -0.28 -6.31 6.87 56.52 0.39 -5.93 15 18 H -0.30 -7.01 7.11 56.52 0.40 -6.60 15 19 H -0.27 -5.85 6.53 56.52 0.37 -5.48 15 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.07 0.98 7.03 -51.93 -0.36 0.62 15 22 H 0.09 1.47 6.21 -51.93 -0.32 1.15 15 23 H 0.15 2.03 8.06 -52.49 -0.42 1.61 15 24 H 0.16 3.14 7.58 -52.49 -0.40 2.74 15 25 H 0.06 1.10 7.40 -51.93 -0.38 0.71 15 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 15 27 H 0.05 0.96 3.27 -51.93 -0.17 0.79 15 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 LS Contribution 245.01 15.07 3.69 3.69 Total: -1.00 -28.14 245.01 -5.65 -33.79 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -2.74 Total: -0.10 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -1.66 Total: -17.13 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.64 Total: -34.38 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.14 Total: 16.56 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.42 Total: -2.44 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.14 -5.65 -33.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261205946.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.643 kcal (2) G-P(sol) polarization free energy of solvation -28.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds