Wall clock time and date at job start Mon Mar 30 2020 02:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38777 * 120.79368 * 2 1 4 4 Cl 1.73602 * 120.43294 * 359.94858 * 3 2 1 5 5 C 1.38312 * 119.13927 * 179.97438 * 3 2 1 6 6 N 1.31870 * 120.74301 * 359.97062 * 5 3 2 7 7 C 1.31855 * 121.74007 * 359.77557 * 6 5 3 8 8 C 1.38229 * 120.78957 * 0.49571 * 7 6 5 9 9 C 1.50703 * 120.41267 * 179.77508 * 8 7 6 10 10 H 1.08994 * 109.47874 * 179.71891 * 9 8 7 11 11 C 1.53003 * 109.47211 * 59.71340 * 9 8 7 12 12 C 1.50708 * 109.46925 * 299.71710 * 9 8 7 13 13 H 1.07991 * 119.99789 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00008 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 9 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 H 1.09001 * 109.47649 * 270.02408 * 1 2 3 21 21 H 1.08998 * 109.47294 * 30.03317 * 1 2 3 22 22 H 1.09006 * 109.46745 * 150.02407 * 1 2 3 23 23 H 1.07996 * 119.62898 * 179.97438 * 5 3 2 24 24 H 1.08000 * 119.60397 * 180.26506 * 7 6 5 25 25 H 1.08996 * 109.47696 * 300.00475 * 11 9 8 26 26 H 1.08998 * 109.46607 * 60.00472 * 11 9 8 27 27 H 1.09003 * 109.47241 * 180.02562 * 11 9 8 28 28 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1921 0.0000 4 17 1.3818 2.7138 -0.0013 5 6 3.6000 1.1522 0.0005 6 7 4.2411 -0.0002 0.0016 7 6 3.5984 -1.1515 0.0066 8 6 2.2167 -1.1906 0.0007 9 6 1.4908 -2.5113 0.0014 10 1 0.4153 -2.3349 0.0012 11 6 1.8773 -3.3050 1.2511 12 6 1.8716 -3.2944 -1.2287 13 1 2.5696 -2.8776 -1.9395 14 6 1.3295 -4.5433 -1.4460 15 7 1.6622 -5.2269 -2.5192 16 14 0.1227 -5.2646 -0.2161 17 1 0.8654 -6.0389 0.8106 18 1 -0.8267 -6.1621 -0.9221 19 1 -0.6303 -4.1662 0.4411 20 1 -0.3634 0.0004 1.0276 21 1 -0.3634 0.8897 -0.5143 22 1 -0.3633 -0.8903 -0.5135 23 1 4.1608 2.0751 0.0001 24 1 4.1583 -2.0750 0.0117 25 1 2.9528 -3.4815 1.2513 26 1 1.6018 -2.7386 2.1407 27 1 1.3526 -4.2604 1.2513 28 1 1.2805 -6.1054 -2.6722 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261205946.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:59 Heat of formation + Delta-G solvation = 0.692520 kcal Electronic energy + Delta-G solvation = -13323.168068 eV Core-core repulsion = 10977.983345 eV Total energy + Delta-G solvation = -2345.184723 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.41262 -37.67108 -36.87723 -34.66071 -33.47949 -30.82347 -28.70998 -27.11314 -25.16882 -23.21723 -21.59318 -18.96043 -17.72612 -17.48636 -16.94491 -16.19906 -15.52684 -15.06164 -14.83262 -14.17924 -14.01817 -13.80394 -13.70894 -13.22422 -13.19499 -12.76074 -12.69468 -12.29983 -12.09899 -11.87243 -11.37650 -11.24330 -10.73577 -10.40923 -10.16278 -9.69959 -8.28436 -6.34049 0.01105 0.24053 1.03567 1.34880 1.39456 1.49971 2.33721 2.72020 3.07496 3.52113 3.69905 3.79795 3.96503 4.24540 4.43236 4.57834 4.67525 4.71854 4.80472 4.90586 4.94056 5.09818 5.16895 5.28929 5.58271 5.66937 5.70042 6.27362 6.71735 6.91756 7.30806 8.88007 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039726 B = 0.008503 C = 0.007855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.664437 B = 3292.000925 C = 3563.795630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 C -0.091 4.091 4 Cl -0.044 7.044 5 C 0.092 3.908 6 N -0.492 5.492 7 C 0.099 3.901 8 C -0.088 4.088 9 C 0.043 3.957 10 H 0.053 0.947 11 C -0.145 4.145 12 C -0.512 4.512 13 H 0.031 0.969 14 C 0.017 3.983 15 N -0.948 5.948 16 Si 0.948 3.052 17 H -0.266 1.266 18 H -0.302 1.302 19 H -0.239 1.239 20 H 0.096 0.904 21 H 0.086 0.914 22 H 0.073 0.927 23 H 0.186 0.814 24 H 0.153 0.847 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 12.221 8.659 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.057 4.057 3 C -0.120 4.120 4 Cl -0.015 7.015 5 C -0.066 4.066 6 N -0.201 5.201 7 C -0.057 4.057 8 C -0.090 4.090 9 C 0.023 3.977 10 H 0.071 0.929 11 C -0.202 4.202 12 C -0.550 4.550 13 H 0.049 0.951 14 C -0.181 4.181 15 N -0.588 5.588 16 Si 0.774 3.226 17 H -0.192 1.192 18 H -0.230 1.230 19 H -0.162 1.162 20 H 0.114 0.886 21 H 0.104 0.896 22 H 0.092 0.908 23 H 0.203 0.797 24 H 0.170 0.830 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.905 12.209 8.563 15.033 hybrid contribution -1.116 -0.749 -0.160 1.353 sum -3.021 11.460 8.403 14.528 Atomic orbital electron populations 1.20970 0.88450 1.04075 1.04176 1.20388 0.98546 0.90674 0.96136 1.21959 0.93971 0.87708 1.08374 1.98333 1.78108 1.28200 1.96875 1.23067 0.89782 0.97305 0.96436 1.67810 1.40539 0.98434 1.13325 1.22710 0.92065 0.95968 0.94922 1.20952 0.94891 0.95828 0.97362 1.18283 0.96457 0.88975 0.93937 0.92875 1.22117 1.01592 0.99001 0.97442 1.21108 1.26539 1.01369 1.05950 0.95069 1.25831 0.98054 0.97177 0.97031 1.70041 1.45920 1.13604 1.29197 0.85870 0.78967 0.79105 0.78635 1.19234 1.23038 1.16214 0.88573 0.89568 0.90836 0.79682 0.82974 0.92646 0.91911 0.94353 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 9.09 71.24 0.65 -2.75 15 2 C -0.05 -1.64 5.92 -19.65 -0.12 -1.76 15 3 C -0.09 -2.72 6.34 22.42 0.14 -2.57 15 4 Cl -0.04 -1.04 27.48 -2.72 -0.07 -1.11 15 5 C 0.09 2.77 10.99 84.70 0.93 3.70 15 6 N -0.49 -17.67 10.36 -195.75 -2.03 -19.69 15 7 C 0.10 3.86 9.91 84.69 0.84 4.70 15 8 C -0.09 -3.44 4.74 -19.78 -0.09 -3.53 15 9 C 0.04 1.83 1.90 -12.28 -0.02 1.81 15 10 H 0.05 2.21 4.67 -2.39 -0.01 2.20 15 11 C -0.14 -5.55 8.49 71.98 0.61 -4.94 15 12 C -0.51 -27.63 8.84 25.60 0.23 -27.41 15 13 H 0.03 1.91 7.86 -2.92 -0.02 1.89 15 14 C 0.02 0.92 5.45 84.65 0.46 1.38 15 15 N -0.95 -57.65 13.96 21.45 0.30 -57.35 15 16 Si 0.95 42.28 24.37 68.60 1.67 43.96 15 17 H -0.27 -11.34 6.87 99.48 0.68 -10.66 15 18 H -0.30 -13.70 7.11 99.48 0.71 -12.99 15 19 H -0.24 -9.51 6.53 99.48 0.65 -8.86 15 20 H 0.10 2.29 8.14 -2.39 -0.02 2.27 15 21 H 0.09 2.13 7.03 -2.39 -0.02 2.11 15 22 H 0.07 2.30 6.21 -2.38 -0.01 2.29 15 23 H 0.19 4.26 8.06 -2.91 -0.02 4.24 15 24 H 0.15 6.09 7.58 -2.91 -0.02 6.07 15 25 H 0.05 2.10 7.40 -2.39 -0.02 2.09 15 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.04 1.51 3.27 -2.39 -0.01 1.51 15 28 H 0.27 15.21 8.31 -92.71 -0.77 14.43 15 Total: -1.00 -61.59 245.01 4.59 -57.00 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.09 Total: 8.57 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 3.63 Total: -31.37 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -1.73 Total: -77.05 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.67 Total: 43.96 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.07 Total: -1.11 kcal Total: -61.59 4.59 -57.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261205946.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.693 kcal (2) G-P(sol) polarization free energy of solvation -61.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds