Wall clock time and date at job start Mon Mar 30 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46700 * 2 1 4 4 C 1.50701 * 109.47357 * 120.00095 * 2 1 3 5 5 H 1.07995 * 119.99524 * 119.99856 * 4 2 1 6 6 C 1.37873 * 119.99902 * 300.00081 * 4 2 1 7 7 N 1.31518 * 120.00080 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99764 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47417 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47056 * 120.00074 * 8 6 4 11 11 H 1.48500 * 109.47322 * 239.99896 * 8 6 4 12 12 C 1.50704 * 109.46940 * 240.00373 * 2 1 3 13 13 N 1.29936 * 126.23951 * 300.04740 * 12 2 1 14 14 N 1.28346 * 110.04377 * 179.97438 * 13 12 2 15 15 C 1.31634 * 109.51921 * 359.97438 * 14 13 12 16 16 N 1.35167 * 108.03122 * 0.02562 * 15 14 13 17 17 C 1.45717 * 117.20689 * 179.97438 * 16 15 14 18 18 C 1.52939 * 112.43419 * 0.02562 * 17 16 15 19 19 S 1.76705 * 141.94334 * 179.97438 * 15 14 13 20 20 H 1.09001 * 109.46700 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46698 * 299.99717 * 1 2 3 22 22 H 1.09000 * 109.47214 * 59.99589 * 1 2 3 23 23 H 0.97001 * 119.99562 * 180.02562 * 7 6 4 24 24 H 1.08995 * 108.90641 * 239.22540 * 17 16 15 25 25 H 1.09000 * 108.90009 * 120.78174 * 17 16 15 26 26 H 1.09004 * 110.48019 * 241.30988 * 18 17 16 27 27 H 1.09003 * 110.48167 * 118.68206 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 3.1467 -2.2871 3.6036 10 1 3.1468 -0.1874 4.8164 11 1 1.1663 -1.5868 4.8160 12 6 2.0323 -0.7104 -1.2306 13 7 1.7936 -1.9455 -1.5557 14 7 2.3730 -2.2281 -2.6656 15 6 3.0180 -1.1690 -3.1071 16 7 2.8312 -0.1657 -2.2208 17 6 3.4658 1.1121 -2.5174 18 6 4.2556 1.0815 -3.8267 19 16 4.0327 -0.6148 -4.4434 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.7088 1.1611 3.4844 24 1 4.1428 1.3678 -1.7024 25 1 2.6961 1.8807 -2.5876 26 1 5.3104 1.2835 -3.6406 27 1 3.8474 1.8023 -4.5353 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287569.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:50 Heat of formation + Delta-G solvation = 81.994908 kcal Electronic energy + Delta-G solvation = -13379.577612 eV Core-core repulsion = 11072.254883 eV Total energy + Delta-G solvation = -2307.322729 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.42656 -36.04063 -34.62876 -31.41253 -30.48487 -28.45427 -25.29278 -24.62927 -22.78651 -21.70025 -19.91016 -17.32500 -16.63435 -16.18075 -15.59704 -14.84777 -14.44632 -13.96469 -13.73039 -12.99882 -12.80588 -12.44016 -11.72498 -11.11136 -11.01626 -10.95223 -10.85358 -10.52719 -10.37768 -10.10152 -9.96921 -9.80722 -9.39174 -8.92271 -8.52706 -7.46323 -6.17003 -4.23385 1.04239 1.86496 2.17771 2.82760 3.24391 3.32767 3.39226 3.51095 3.98477 4.34909 4.42961 5.01255 5.14908 5.17396 5.26772 5.34957 5.78776 6.04266 6.44923 6.67314 6.84170 6.94374 7.26053 7.45071 7.70633 7.89553 8.12693 8.78505 9.31976 9.42132 10.89394 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043090 B = 0.007772 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.645134 B = 3601.980729 C = 3665.991291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.121 3.879 3 H 0.042 0.958 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.902 3.098 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.281 1.281 12 C 0.268 3.732 13 N -0.284 5.284 14 N -0.262 5.262 15 C 0.120 3.880 16 N -0.508 5.508 17 C 0.099 3.901 18 C -0.117 4.117 19 S -0.005 6.005 20 H 0.043 0.957 21 H 0.095 0.905 22 H 0.008 0.992 23 H 0.264 0.736 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.989 5.236 -10.339 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.100 3.900 3 H 0.060 0.940 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.729 3.271 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.207 1.207 12 C 0.001 3.999 13 N -0.121 5.121 14 N -0.106 5.106 15 C -0.255 4.255 16 N -0.206 5.206 17 C -0.025 4.025 18 C -0.266 4.266 19 S 0.221 5.779 20 H 0.062 0.938 21 H 0.113 0.887 22 H 0.027 0.973 23 H 0.073 0.927 24 H 0.123 0.877 25 H 0.120 0.880 26 H 0.139 0.861 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.757 3.415 -11.073 12.939 hybrid contribution 0.363 1.451 1.859 2.386 sum 6.120 4.866 -9.215 12.085 Atomic orbital electron populations 1.21766 0.95692 1.00833 1.00549 1.17566 0.93802 0.94287 0.84327 0.94004 1.20962 1.31849 1.12647 0.88957 0.91886 1.24905 0.94789 0.94948 0.99058 1.69874 1.36366 1.22824 1.23834 0.86363 0.78778 0.79695 0.82255 1.19559 1.20956 1.20655 1.26670 0.90719 0.90551 0.91965 1.73983 1.20507 1.10977 1.06608 1.74454 1.09708 1.20238 1.06170 1.27056 1.08650 0.91404 0.98389 1.47977 1.41468 1.11106 1.20060 1.21398 0.98744 0.84493 0.97913 1.24425 1.05457 0.98297 0.98459 1.85750 1.60056 1.08611 1.23480 0.93775 0.88662 0.97299 0.92662 0.87685 0.87992 0.86084 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.95 37.16 0.33 -2.80 15 2 C 0.12 3.01 2.77 -92.92 -0.26 2.75 15 3 H 0.04 1.04 8.14 -51.93 -0.42 0.62 15 4 C -0.51 -13.79 8.55 -34.44 -0.29 -14.09 15 5 H 0.06 1.80 7.74 -52.49 -0.41 1.40 15 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -24.14 11.32 55.43 0.63 -23.51 15 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 15 9 H -0.27 -6.42 7.11 56.52 0.40 -6.01 15 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 12 C 0.27 6.30 6.77 -152.72 -1.03 5.27 15 13 N -0.28 -7.18 12.16 33.25 0.40 -6.77 15 14 N -0.26 -6.18 12.26 30.58 0.38 -5.80 15 15 C 0.12 2.37 9.01 -89.31 -0.80 1.57 15 16 N -0.51 -9.82 3.40 -113.92 -0.39 -10.20 15 17 C 0.10 1.28 7.45 -4.50 -0.03 1.25 15 18 C -0.12 -1.07 7.37 37.13 0.27 -0.80 15 19 S -0.01 -0.07 23.24 -107.50 -2.50 -2.57 15 20 H 0.04 1.09 8.14 -51.93 -0.42 0.66 15 21 H 0.09 2.43 6.07 -51.93 -0.32 2.12 15 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 15 23 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 24 H 0.10 1.27 8.14 -51.93 -0.42 0.85 15 25 H 0.10 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.12 0.80 8.14 -51.93 -0.42 0.38 15 27 H 0.12 0.76 8.14 -51.93 -0.42 0.34 15 LS Contribution 248.52 15.07 3.75 3.75 Total: -1.00 -31.70 248.52 -7.48 -39.18 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: -2.82 Total: -4.92 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.91 Total: -5.20 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 1.02 Total: -46.29 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.50 Total: -2.57 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.70 -7.48 -39.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287569.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.176 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds