Wall clock time and date at job start Mon Mar 30 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46700 * 2 1 4 4 C 1.50701 * 109.47357 * 120.00095 * 2 1 3 5 5 H 1.07995 * 119.99524 * 119.99856 * 4 2 1 6 6 C 1.37873 * 119.99902 * 300.00081 * 4 2 1 7 7 N 1.31518 * 120.00080 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99764 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47417 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47056 * 120.00074 * 8 6 4 11 11 H 1.48500 * 109.47322 * 239.99896 * 8 6 4 12 12 C 1.50704 * 109.46940 * 240.00373 * 2 1 3 13 13 N 1.29936 * 126.23951 * 300.04740 * 12 2 1 14 14 N 1.28346 * 110.04377 * 179.97438 * 13 12 2 15 15 C 1.31634 * 109.51921 * 359.97438 * 14 13 12 16 16 N 1.35167 * 108.03122 * 0.02562 * 15 14 13 17 17 C 1.45717 * 117.20689 * 179.97438 * 16 15 14 18 18 C 1.52939 * 112.43419 * 0.02562 * 17 16 15 19 19 S 1.76705 * 141.94334 * 179.97438 * 15 14 13 20 20 H 1.09001 * 109.46700 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46698 * 299.99717 * 1 2 3 22 22 H 1.09000 * 109.47214 * 59.99589 * 1 2 3 23 23 H 0.97001 * 119.99562 * 180.02562 * 7 6 4 24 24 H 1.08995 * 108.90641 * 239.22540 * 17 16 15 25 25 H 1.09000 * 108.90009 * 120.78174 * 17 16 15 26 26 H 1.09004 * 110.48019 * 241.30988 * 18 17 16 27 27 H 1.09003 * 110.48167 * 118.68206 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 3.1467 -2.2871 3.6036 10 1 3.1468 -0.1874 4.8164 11 1 1.1663 -1.5868 4.8160 12 6 2.0323 -0.7104 -1.2306 13 7 1.7936 -1.9455 -1.5557 14 7 2.3730 -2.2281 -2.6656 15 6 3.0180 -1.1690 -3.1071 16 7 2.8312 -0.1657 -2.2208 17 6 3.4658 1.1121 -2.5174 18 6 4.2556 1.0815 -3.8267 19 16 4.0327 -0.6148 -4.4434 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.7088 1.1611 3.4844 24 1 4.1428 1.3678 -1.7024 25 1 2.6961 1.8807 -2.5876 26 1 5.3104 1.2835 -3.6406 27 1 3.8474 1.8023 -4.5353 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287569.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:50 Heat of formation + Delta-G solvation = 62.125634 kcal Electronic energy + Delta-G solvation = -13380.439209 eV Core-core repulsion = 11072.254883 eV Total energy + Delta-G solvation = -2308.184325 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.01288 -37.33597 -36.58504 -33.35050 -31.66452 -30.21058 -27.34721 -25.79576 -24.57802 -23.13587 -21.55652 -18.88056 -18.21905 -17.72934 -17.04450 -16.74588 -15.64780 -15.37969 -14.99950 -14.73026 -14.27549 -13.64242 -13.38435 -13.01946 -12.88583 -12.66918 -12.46429 -12.32084 -12.05237 -11.77702 -11.59836 -11.44923 -11.21305 -10.58812 -10.50953 -8.73092 -8.21434 -6.34840 -0.16169 0.61532 0.85961 1.38175 1.41913 1.48301 1.54976 1.78440 2.40405 2.99642 3.07771 3.64855 3.69653 4.07709 4.19205 4.47834 4.48930 4.50264 4.76487 4.84533 4.99051 5.01421 5.41720 5.66316 5.71106 5.89143 6.13551 6.66823 7.32885 7.66471 8.83857 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043090 B = 0.007772 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.645134 B = 3601.980729 C = 3665.991291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.127 3.873 3 H 0.040 0.960 4 C -0.526 4.526 5 H 0.038 0.962 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.958 3.042 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.275 1.275 12 C 0.245 3.755 13 N -0.323 5.323 14 N -0.315 5.315 15 C 0.124 3.876 16 N -0.507 5.507 17 C 0.080 3.920 18 C -0.099 4.099 19 S 0.020 5.980 20 H 0.026 0.974 21 H 0.080 0.920 22 H 0.028 0.972 23 H 0.269 0.731 24 H 0.114 0.886 25 H 0.122 0.878 26 H 0.158 0.842 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 7.055 -11.373 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.106 3.894 3 H 0.058 0.942 4 C -0.565 4.565 5 H 0.057 0.943 6 C -0.171 4.171 7 N -0.544 5.544 8 Si 0.783 3.217 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.201 1.201 12 C -0.025 4.025 13 N -0.159 5.159 14 N -0.158 5.158 15 C -0.252 4.252 16 N -0.204 5.204 17 C -0.043 4.043 18 C -0.248 4.248 19 S 0.246 5.754 20 H 0.045 0.955 21 H 0.098 0.902 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.132 0.868 25 H 0.140 0.860 26 H 0.176 0.824 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.255 5.262 -12.122 15.075 hybrid contribution -0.008 0.986 2.054 2.278 sum 7.247 6.247 -10.068 13.889 Atomic orbital electron populations 1.21591 0.95682 0.99690 1.00667 1.17335 0.93824 0.93858 0.84384 0.94198 1.21037 1.32360 1.12401 0.90724 0.94330 1.25525 0.94820 0.95553 1.01214 1.69933 1.36471 1.23321 1.24702 0.85510 0.78372 0.78539 0.79266 1.20559 1.19470 1.20074 1.26193 0.92729 0.90652 0.92888 1.73826 1.21837 1.12381 1.07882 1.74289 1.12327 1.22508 1.06656 1.28071 1.07010 0.90435 0.99683 1.48225 1.40455 1.13042 1.18664 1.21985 0.99819 0.82133 1.00339 1.24774 1.07426 0.95749 0.96813 1.85745 1.57575 1.11500 1.20628 0.95456 0.90163 0.95306 0.92171 0.86771 0.86040 0.82448 0.81995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.95 71.98 0.64 -5.14 15 2 C 0.13 6.42 2.77 -12.28 -0.03 6.38 15 3 H 0.04 1.99 8.14 -2.39 -0.02 1.97 15 4 C -0.53 -29.45 8.55 25.60 0.22 -29.23 15 5 H 0.04 2.30 7.74 -2.91 -0.02 2.27 15 6 C 0.03 1.58 5.30 84.65 0.45 2.03 15 7 N -0.91 -49.04 11.32 21.45 0.24 -48.79 15 8 Si 0.96 43.37 29.54 68.60 2.03 45.40 15 9 H -0.28 -13.03 7.11 99.48 0.71 -12.33 15 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 12 C 0.24 11.73 6.77 137.19 0.93 12.66 15 13 N -0.32 -16.91 12.16 -48.71 -0.59 -17.50 15 14 N -0.31 -15.19 12.26 -57.16 -0.70 -15.89 15 15 C 0.12 4.79 9.01 179.89 1.62 6.41 15 16 N -0.51 -19.09 3.40 -514.34 -1.75 -20.84 15 17 C 0.08 1.80 7.45 86.51 0.64 2.45 15 18 C -0.10 -1.30 7.37 71.96 0.53 -0.76 15 19 S 0.02 0.48 23.24 -56.49 -1.31 -0.84 15 20 H 0.03 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.08 4.16 6.07 -2.39 -0.01 4.15 15 22 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 23 H 0.27 13.68 8.31 -92.71 -0.77 12.91 15 24 H 0.11 2.41 8.14 -2.39 -0.02 2.39 15 25 H 0.12 2.30 8.14 -2.39 -0.02 2.29 15 26 H 0.16 1.07 8.14 -2.38 -0.02 1.05 15 27 H 0.16 0.95 8.14 -2.39 -0.02 0.93 15 Total: -1.00 -71.85 248.52 4.09 -67.76 By element: Atomic # 1 Polarization: -5.27 SS G_CDS: 1.18 Total: -4.10 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.00 Total: -5.20 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -2.80 Total: -103.02 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -1.31 Total: -0.84 kcal Total: -71.85 4.09 -67.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287569.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.885 kcal (2) G-P(sol) polarization free energy of solvation -71.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds