Wall clock time and date at job start Mon Mar 30 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 N 1.29936 * 126.23652 * 60.02224 * 12 2 1 14 14 N 1.28350 * 110.04354 * 180.02562 * 13 12 2 15 15 C 1.31632 * 109.51913 * 0.02562 * 14 13 12 16 16 N 1.35181 * 108.02882 * 359.72744 * 15 14 13 17 17 C 1.45719 * 117.20172 * 179.66837 * 16 15 14 18 18 C 1.52938 * 112.43908 * 0.50498 * 17 16 15 19 19 S 1.76706 * 141.95028 * 179.97438 * 15 14 13 20 20 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 24 24 H 1.09009 * 109.10036 * 239.59198 * 17 16 15 25 25 H 1.09000 * 108.58740 * 121.07454 * 17 16 15 26 26 H 1.08997 * 110.48239 * 241.06227 * 18 17 16 27 27 H 1.09000 * 110.47613 * 118.42877 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1457 -2.2877 -3.6037 10 1 1.1662 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0323 -0.7104 1.2305 13 7 1.7946 -1.9460 1.5549 14 7 2.3736 -2.2285 2.6650 15 6 3.0174 -1.1690 3.1074 16 7 2.8346 -0.1670 2.2186 17 6 3.4620 1.1132 2.5198 18 6 4.2512 1.0828 3.8294 19 16 4.0300 -0.6140 4.4450 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7096 1.1617 -3.4844 24 1 2.6909 1.8806 2.5901 25 1 4.1397 1.3683 1.7050 26 1 3.8416 1.8022 4.5384 27 1 5.3058 1.2868 3.6439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287570.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:52 Heat of formation + Delta-G solvation = 81.984646 kcal Electronic energy + Delta-G solvation = -13379.588776 eV Core-core repulsion = 11072.265602 eV Total energy + Delta-G solvation = -2307.323174 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.42554 -36.04047 -34.62848 -31.41308 -30.48429 -28.45489 -25.29210 -24.62884 -22.78625 -21.69981 -19.90865 -17.32450 -16.63663 -16.17759 -15.59873 -14.84742 -14.44598 -13.96499 -13.73019 -12.99835 -12.80552 -12.44224 -11.72460 -11.11246 -11.01628 -10.95189 -10.85264 -10.52641 -10.37763 -10.10149 -9.96769 -9.80723 -9.39421 -8.92177 -8.52725 -7.46332 -6.16992 -4.23332 1.04216 1.86503 2.17831 2.82708 3.24407 3.32766 3.39242 3.51100 3.98449 4.34967 4.43024 5.01222 5.14908 5.17222 5.26816 5.35029 5.78807 6.04244 6.44925 6.67271 6.84103 6.94394 7.26111 7.45053 7.70616 7.89496 8.12693 8.78535 9.31973 9.42156 10.89421 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043113 B = 0.007771 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.305874 B = 3602.131655 C = 3666.670606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.121 3.879 3 H 0.042 0.958 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.902 3.098 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.283 1.283 12 C 0.268 3.732 13 N -0.284 5.284 14 N -0.262 5.262 15 C 0.120 3.880 16 N -0.508 5.508 17 C 0.099 3.901 18 C -0.117 4.117 19 S -0.005 6.005 20 H 0.043 0.957 21 H 0.008 0.992 22 H 0.095 0.905 23 H 0.264 0.736 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 5.246 10.355 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.100 3.900 3 H 0.060 0.940 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.729 3.271 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.210 1.210 12 C 0.001 3.999 13 N -0.121 5.121 14 N -0.106 5.106 15 C -0.255 4.255 16 N -0.206 5.206 17 C -0.025 4.025 18 C -0.266 4.266 19 S 0.221 5.779 20 H 0.062 0.938 21 H 0.027 0.973 22 H 0.113 0.887 23 H 0.073 0.927 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.739 3.421 11.084 12.942 hybrid contribution 0.363 1.450 -1.858 2.385 sum 6.101 4.872 9.226 12.086 Atomic orbital electron populations 1.21765 0.95690 1.00833 1.00548 1.17566 0.93800 0.94289 0.84328 0.94002 1.20965 1.31854 1.12647 0.88957 0.91888 1.24905 0.94789 0.94945 0.99057 1.69870 1.36401 1.22785 1.23837 0.86363 0.78781 0.79695 0.82258 1.19559 1.20659 1.20951 1.26669 0.90572 0.90597 0.92065 1.73985 1.20499 1.10955 1.06640 1.74454 1.09753 1.20235 1.06124 1.27061 1.08685 0.91479 0.98281 1.47984 1.41541 1.11074 1.20021 1.21408 0.98829 0.84425 0.97881 1.24424 1.05465 0.98290 0.98461 1.85750 1.60222 1.08544 1.23383 0.93775 0.97296 0.88667 0.92661 0.87955 0.87706 0.86116 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.95 37.16 0.33 -2.79 15 2 C 0.12 3.01 2.77 -92.92 -0.26 2.75 15 3 H 0.04 1.04 8.14 -51.93 -0.42 0.62 15 4 C -0.51 -13.80 8.55 -34.44 -0.29 -14.09 15 5 H 0.06 1.80 7.74 -52.49 -0.41 1.40 15 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -24.14 11.32 55.43 0.63 -23.51 15 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 15 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 15 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 12 C 0.27 6.30 6.77 -152.73 -1.03 5.27 15 13 N -0.28 -7.18 12.16 33.25 0.40 -6.77 15 14 N -0.26 -6.18 12.26 30.58 0.38 -5.80 15 15 C 0.12 2.37 9.01 -89.30 -0.80 1.57 15 16 N -0.51 -9.82 3.40 -113.92 -0.39 -10.20 15 17 C 0.10 1.28 7.45 -4.49 -0.03 1.25 15 18 C -0.12 -1.07 7.37 37.13 0.27 -0.80 15 19 S -0.01 -0.07 23.24 -107.50 -2.50 -2.57 15 20 H 0.04 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 15 22 H 0.09 2.43 6.07 -51.93 -0.32 2.12 15 23 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 24 H 0.10 1.16 8.14 -51.92 -0.42 0.73 15 25 H 0.10 1.27 8.14 -51.93 -0.42 0.85 15 26 H 0.12 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.12 0.80 8.14 -51.93 -0.42 0.38 15 LS Contribution 248.52 15.07 3.75 3.75 Total: -1.00 -31.71 248.52 -7.48 -39.19 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: -2.82 Total: -4.92 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.91 Total: -5.20 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 1.02 Total: -46.29 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.50 Total: -2.57 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.71 -7.48 -39.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287570.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.171 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds