Wall clock time and date at job start Mon Mar 30 2020 02:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 N 1.29936 * 126.23652 * 60.02224 * 12 2 1 14 14 N 1.28350 * 110.04354 * 180.02562 * 13 12 2 15 15 C 1.31632 * 109.51913 * 0.02562 * 14 13 12 16 16 N 1.35181 * 108.02882 * 359.72744 * 15 14 13 17 17 C 1.45719 * 117.20172 * 179.66837 * 16 15 14 18 18 C 1.52938 * 112.43908 * 0.50498 * 17 16 15 19 19 S 1.76706 * 141.95028 * 179.97438 * 15 14 13 20 20 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 24 24 H 1.09009 * 109.10036 * 239.59198 * 17 16 15 25 25 H 1.09000 * 108.58740 * 121.07454 * 17 16 15 26 26 H 1.08997 * 110.48239 * 241.06227 * 18 17 16 27 27 H 1.09000 * 110.47613 * 118.42877 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1457 -2.2877 -3.6037 10 1 1.1662 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0323 -0.7104 1.2305 13 7 1.7946 -1.9460 1.5549 14 7 2.3736 -2.2285 2.6650 15 6 3.0174 -1.1690 3.1074 16 7 2.8346 -0.1670 2.2186 17 6 3.4620 1.1132 2.5198 18 6 4.2512 1.0828 3.8294 19 16 4.0300 -0.6140 4.4450 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7096 1.1617 -3.4844 24 1 2.6909 1.8806 2.5901 25 1 4.1397 1.3683 1.7050 26 1 3.8416 1.8022 4.5384 27 1 5.3058 1.2868 3.6439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287570.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:51 Heat of formation + Delta-G solvation = 62.108519 kcal Electronic energy + Delta-G solvation = -13380.450669 eV Core-core repulsion = 11072.265602 eV Total energy + Delta-G solvation = -2308.185068 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.01184 -37.33574 -36.58477 -33.35121 -31.66393 -30.21104 -27.34646 -25.79544 -24.57764 -23.13543 -21.55500 -18.88065 -18.21914 -17.72785 -17.04579 -16.74559 -15.64811 -15.38022 -14.99963 -14.72979 -14.27478 -13.64172 -13.38605 -13.02082 -12.88552 -12.66809 -12.46439 -12.32054 -12.05262 -11.77576 -11.59655 -11.45058 -11.21453 -10.58781 -10.51012 -8.73096 -8.21452 -6.34817 -0.16173 0.61575 0.85978 1.38118 1.41871 1.48240 1.54963 1.78440 2.40411 2.99612 3.07765 3.64838 3.69774 4.07652 4.19216 4.47949 4.48810 4.50252 4.76519 4.84502 4.99070 5.01483 5.41727 5.66391 5.71143 5.89075 6.13545 6.66807 7.32872 7.66473 8.83847 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043113 B = 0.007771 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.305874 B = 3602.131655 C = 3666.670606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.127 3.873 3 H 0.040 0.960 4 C -0.527 4.527 5 H 0.038 0.962 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.958 3.042 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.269 1.269 12 C 0.245 3.755 13 N -0.323 5.323 14 N -0.315 5.315 15 C 0.123 3.877 16 N -0.507 5.507 17 C 0.080 3.920 18 C -0.099 4.099 19 S 0.020 5.980 20 H 0.026 0.974 21 H 0.028 0.972 22 H 0.080 0.920 23 H 0.269 0.731 24 H 0.122 0.878 25 H 0.114 0.886 26 H 0.162 0.838 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.444 7.068 11.393 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.106 3.894 3 H 0.058 0.942 4 C -0.565 4.565 5 H 0.057 0.943 6 C -0.171 4.171 7 N -0.544 5.544 8 Si 0.783 3.217 9 H -0.206 1.206 10 H -0.201 1.201 11 H -0.195 1.195 12 C -0.025 4.025 13 N -0.159 5.159 14 N -0.158 5.158 15 C -0.252 4.252 16 N -0.204 5.204 17 C -0.043 4.043 18 C -0.248 4.248 19 S 0.246 5.754 20 H 0.045 0.955 21 H 0.047 0.953 22 H 0.098 0.902 23 H 0.078 0.922 24 H 0.140 0.860 25 H 0.132 0.868 26 H 0.180 0.820 27 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.230 5.272 12.137 15.079 hybrid contribution -0.007 0.983 -2.055 2.278 sum 7.224 6.255 10.082 13.891 Atomic orbital electron populations 1.21590 0.95673 0.99691 1.00670 1.17335 0.93827 0.93857 0.84382 0.94196 1.21039 1.32366 1.12399 0.90729 0.94340 1.25524 0.94820 0.95551 1.01212 1.69929 1.36503 1.23280 1.24705 0.85511 0.78375 0.78538 0.79271 1.20566 1.20077 1.19461 1.26191 0.92580 0.90696 0.92990 1.73828 1.21830 1.12360 1.07914 1.74289 1.12376 1.22503 1.06609 1.28075 1.07038 0.90506 0.99585 1.48234 1.40498 1.13028 1.18640 1.21996 0.99912 0.82058 1.00295 1.24773 1.07436 0.95736 0.96819 1.85745 1.57749 1.11436 1.20520 0.95456 0.95292 0.90169 0.92168 0.85990 0.86814 0.81989 0.82454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.95 71.98 0.64 -5.13 15 2 C 0.13 6.42 2.77 -12.28 -0.03 6.38 15 3 H 0.04 1.99 8.14 -2.39 -0.02 1.97 15 4 C -0.53 -29.47 8.55 25.60 0.22 -29.25 15 5 H 0.04 2.29 7.74 -2.91 -0.02 2.27 15 6 C 0.03 1.58 5.30 84.66 0.45 2.03 15 7 N -0.91 -49.03 11.32 21.45 0.24 -48.79 15 8 Si 0.96 43.38 29.54 68.60 2.03 45.41 15 9 H -0.28 -13.04 7.11 99.48 0.71 -12.34 15 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 12 C 0.24 11.73 6.77 137.19 0.93 12.66 15 13 N -0.32 -16.91 12.16 -48.72 -0.59 -17.51 15 14 N -0.31 -15.19 12.26 -57.15 -0.70 -15.89 15 15 C 0.12 4.79 9.01 179.89 1.62 6.41 15 16 N -0.51 -19.09 3.40 -514.32 -1.75 -20.84 15 17 C 0.08 1.80 7.45 86.51 0.64 2.45 15 18 C -0.10 -1.29 7.37 71.96 0.53 -0.76 15 19 S 0.02 0.47 23.24 -56.49 -1.31 -0.84 15 20 H 0.03 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.03 1.25 8.14 -2.39 -0.02 1.23 15 22 H 0.08 4.16 6.07 -2.39 -0.01 4.14 15 23 H 0.27 13.68 8.31 -92.71 -0.77 12.91 15 24 H 0.12 2.31 8.14 -2.38 -0.02 2.29 15 25 H 0.11 2.41 8.14 -2.39 -0.02 2.39 15 26 H 0.16 0.95 8.14 -2.39 -0.02 0.93 15 27 H 0.16 1.07 8.14 -2.39 -0.02 1.05 15 Total: -1.00 -71.87 248.52 4.09 -67.78 By element: Atomic # 1 Polarization: -5.29 SS G_CDS: 1.18 Total: -4.11 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.00 Total: -5.21 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -2.80 Total: -103.03 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -1.31 Total: -0.84 kcal Total: -71.87 4.09 -67.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287570.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.886 kcal (2) G-P(sol) polarization free energy of solvation -71.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds