Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76200 * 102.99688 * 2 1 4 4 C 1.39647 * 120.07883 * 179.97438 * 3 2 1 5 5 C 1.38335 * 117.96003 * 179.97438 * 4 3 2 6 6 C 1.39606 * 117.97130 * 359.97438 * 5 4 3 7 7 N 1.39367 * 120.06738 * 179.97438 * 6 5 4 8 8 C 1.46508 * 119.99978 * 0.02562 * 7 6 5 9 9 C 1.50700 * 109.46805 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00279 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99501 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99602 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00365 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47146 * 89.99883 * 13 11 9 15 15 H 1.48492 * 109.47237 * 209.99905 * 13 11 9 16 16 H 1.48498 * 109.47201 * 329.99834 * 13 11 9 17 17 N 1.32275 * 119.86269 * 0.02562 * 6 5 4 18 18 N 1.28343 * 122.19019 * 359.97438 * 17 6 5 19 19 H 1.08999 * 109.47143 * 60.00001 * 1 2 3 20 20 H 1.09003 * 109.47142 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47299 * 299.99500 * 1 2 3 22 22 H 1.07999 * 121.01910 * 0.25364 * 4 3 2 23 23 H 1.08005 * 121.01021 * 180.02562 * 5 4 3 24 24 H 0.96993 * 120.00155 * 179.97438 * 7 6 5 25 25 H 1.08997 * 109.46661 * 299.99107 * 8 7 6 26 26 H 1.09004 * 109.47251 * 59.99355 * 8 7 6 27 27 H 0.97004 * 120.00033 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5451 2.1271 0.0005 5 6 3.8062 3.4856 0.0000 6 6 2.7190 4.3613 -0.0017 7 7 2.9317 5.7386 -0.0017 8 6 4.2975 6.2688 -0.0007 9 6 4.2515 7.7751 -0.0017 10 1 3.3002 8.2863 -0.0034 11 6 5.4240 8.5006 -0.0004 12 7 5.3838 9.8151 -0.0007 13 14 7.0694 7.6164 0.0018 14 1 7.5072 7.3817 -1.3977 15 1 8.0785 8.4502 0.7028 16 1 6.9307 6.3142 0.7020 17 7 1.4865 3.8810 -0.0021 18 7 1.2437 2.6208 -0.0015 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 4.3490 1.4058 -0.0031 23 1 4.8203 3.8573 -0.0001 24 1 2.1757 6.3461 -0.0033 25 1 4.8213 5.9216 0.8899 26 1 4.8230 5.9211 -0.8901 27 1 6.2087 10.3255 -0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306512886.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = 54.057759 kcal Electronic energy + Delta-G solvation = -12607.353282 eV Core-core repulsion = 10298.819108 eV Total energy + Delta-G solvation = -2308.534175 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.48999 -36.02706 -32.89605 -32.80036 -30.80062 -28.89672 -27.52562 -24.56694 -23.40705 -21.62443 -18.33416 -17.64408 -17.03775 -16.20494 -15.01897 -14.79623 -14.76987 -13.97418 -13.63845 -13.46162 -13.35842 -13.12658 -12.57373 -12.39825 -11.41492 -11.21114 -11.06493 -10.64637 -10.44740 -10.14789 -10.07224 -9.67472 -9.32413 -8.88757 -8.29611 -7.04750 -6.34846 -4.39052 1.11303 1.37159 1.52602 2.27986 3.11018 3.17613 3.19240 3.69722 3.89104 4.16028 4.76606 4.90661 4.98134 4.98658 5.10956 5.17787 5.25631 5.75542 5.84111 6.01143 6.17429 6.39569 6.72287 7.13822 7.48009 8.10351 8.27788 8.65748 9.08352 9.21981 10.77250 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.067089 B = 0.005518 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.254763 B = 5072.660823 C = 5469.468864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.083 6.083 3 C -0.018 4.018 4 C -0.057 4.057 5 C -0.168 4.168 6 C 0.349 3.651 7 N -0.681 5.681 8 C 0.222 3.778 9 C -0.546 4.546 10 H 0.083 0.917 11 C 0.079 3.921 12 N -0.886 5.886 13 Si 0.878 3.122 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.264 1.264 17 N -0.314 5.314 18 N -0.205 5.205 19 H 0.086 0.914 20 H 0.100 0.900 21 H 0.086 0.914 22 H 0.147 0.853 23 H 0.151 0.849 24 H 0.409 0.591 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 -17.179 0.016 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.148 5.852 3 C -0.279 4.279 4 C -0.089 4.089 5 C -0.203 4.203 6 C 0.103 3.897 7 N -0.309 5.309 8 C 0.100 3.900 9 C -0.584 4.584 10 H 0.101 0.899 11 C -0.126 4.126 12 N -0.523 5.523 13 Si 0.705 3.295 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.188 1.188 17 N -0.168 5.168 18 N -0.051 5.051 19 H 0.105 0.895 20 H 0.119 0.881 21 H 0.105 0.895 22 H 0.164 0.836 23 H 0.168 0.832 24 H 0.245 0.755 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.780 -17.469 0.018 17.873 hybrid contribution 1.416 0.851 -0.013 1.652 sum -2.364 -16.618 0.004 16.785 Atomic orbital electron populations 1.23417 0.93833 1.05795 1.06753 1.85118 1.07768 0.98834 1.93517 1.24011 0.94185 0.99668 1.10069 1.21652 0.95716 0.95856 0.95656 1.21827 1.00546 0.92699 1.05248 1.20258 0.91080 0.88013 0.90339 1.45145 1.10910 1.00315 1.74537 1.19697 0.78307 0.95927 0.96112 1.20973 0.95676 0.87874 1.53866 0.89936 1.24807 0.99145 0.94793 0.93848 1.69869 1.28562 1.05253 1.48581 0.86814 0.83580 0.80175 0.78973 1.19702 1.20618 1.18834 1.72723 1.17737 1.05777 1.20570 1.73054 1.28462 0.95637 1.07908 0.89531 0.88118 0.89540 0.83572 0.83161 0.75521 0.95757 0.96221 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 10.04 101.05 1.01 -0.27 15 2 S -0.08 -1.01 22.57 -107.50 -2.43 -3.43 15 3 C -0.02 -0.28 7.08 -16.81 -0.12 -0.40 15 4 C -0.06 -0.82 9.96 -39.02 -0.39 -1.21 15 5 C -0.17 -2.77 9.41 -39.04 -0.37 -3.14 15 6 C 0.35 6.65 7.75 -154.59 -1.20 5.45 15 7 N -0.68 -13.80 5.74 -61.39 -0.35 -14.15 15 8 C 0.22 4.90 3.74 -5.19 -0.02 4.88 15 9 C -0.55 -14.36 9.83 -34.44 -0.34 -14.70 15 10 H 0.08 2.34 7.84 -52.49 -0.41 1.93 15 11 C 0.08 2.12 5.47 -17.82 -0.10 2.02 15 12 N -0.89 -25.50 13.96 55.43 0.77 -24.72 15 13 Si 0.88 19.63 27.47 -169.99 -4.67 14.96 15 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 16 H -0.26 -5.53 6.54 56.52 0.37 -5.16 15 17 N -0.31 -6.12 11.52 31.29 0.36 -5.76 15 18 N -0.21 -3.67 10.59 31.48 0.33 -3.34 15 19 H 0.09 0.91 8.14 -51.92 -0.42 0.49 15 20 H 0.10 0.72 8.14 -51.92 -0.42 0.30 15 21 H 0.09 0.91 8.14 -51.92 -0.42 0.48 15 22 H 0.15 1.63 8.06 -52.49 -0.42 1.21 15 23 H 0.15 2.30 6.84 -52.48 -0.36 1.94 15 24 H 0.41 8.20 8.45 -40.82 -0.34 7.85 15 25 H 0.02 0.54 7.02 -51.93 -0.36 0.17 15 26 H 0.02 0.43 7.39 -51.93 -0.38 0.05 15 27 H 0.27 7.22 8.31 -40.82 -0.34 6.89 15 LS Contribution 254.21 15.07 3.83 3.83 Total: -1.00 -28.90 254.21 -6.39 -35.28 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -2.72 Total: 4.71 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.51 Total: -7.37 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 1.12 Total: -47.98 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.43 Total: -3.43 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.90 -6.39 -35.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306512886.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.340 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds