Wall clock time and date at job start Mon Mar 30 2020 02:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30497 * 126.31436 * 2 1 4 4 N 1.28538 * 110.05676 * 179.82607 * 3 2 1 5 5 C 1.31397 * 109.79884 * 0.44947 * 4 3 2 6 6 S 1.76201 * 126.49312 * 179.72872 * 5 4 3 7 7 C 1.76201 * 99.99715 * 0.02562 * 6 5 4 8 8 H 1.07993 * 120.00284 * 0.02562 * 7 6 5 9 9 C 1.38675 * 119.99777 * 179.97438 * 7 6 5 10 10 N 1.31637 * 119.99760 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00039 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47271 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47515 * 120.00126 * 11 9 7 14 14 H 1.48503 * 109.46973 * 240.00320 * 11 9 7 15 15 N 1.36481 * 126.31974 * 180.31867 * 2 1 3 16 16 C 1.46500 * 127.11521 * 359.95625 * 15 2 1 17 17 C 1.53005 * 117.49610 * 196.81908 * 16 15 2 18 18 C 1.53007 * 117.49605 * 128.16026 * 16 15 2 19 19 H 1.09000 * 109.46840 * 269.68841 * 1 2 3 20 20 H 1.08996 * 109.47252 * 29.68577 * 1 2 3 21 21 H 1.08998 * 109.47495 * 149.69104 * 1 2 3 22 22 H 0.97003 * 120.00004 * 179.97438 * 10 9 7 23 23 H 1.08999 * 115.55646 * 342.48819 * 16 15 2 24 24 H 1.09001 * 117.49957 * 359.97438 * 17 16 15 25 25 H 1.08999 * 117.49638 * 145.02389 * 17 16 15 26 26 H 1.08998 * 117.49535 * 214.97489 * 18 16 15 27 27 H 1.08994 * 117.49703 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2798 1.0515 0.0000 4 7 3.5138 0.6917 0.0037 5 6 3.5949 -0.6198 -0.0035 6 16 5.0735 -1.5781 -0.0088 7 6 6.2740 -0.2884 -0.0011 8 1 5.9574 0.7440 0.0053 9 6 7.6255 -0.5992 -0.0022 10 7 8.0114 -1.8577 -0.0084 11 14 8.8983 0.7680 0.0067 12 1 8.2108 2.0843 0.0135 13 1 9.7473 0.6462 1.2189 14 1 9.7486 0.6606 -1.2060 15 7 2.3153 -1.0996 -0.0061 16 6 1.8977 -2.5038 -0.0130 17 6 2.9417 -3.5533 0.3737 18 6 2.4994 -3.4145 -1.0852 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 0.8927 -0.5089 21 1 -0.3634 -0.8872 -0.5186 22 1 8.9568 -2.0751 -0.0095 23 1 0.8649 -2.6887 0.2826 24 1 3.9395 -3.1990 0.6328 25 1 2.5957 -4.4287 0.9233 26 1 1.8626 -4.1987 -1.4947 27 1 3.2056 -2.9688 -1.7856 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306804221.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:24 Heat of formation + Delta-G solvation = 95.904710 kcal Electronic energy + Delta-G solvation = -13166.599671 eV Core-core repulsion = 10859.880116 eV Total energy + Delta-G solvation = -2306.719555 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.04206 -37.30659 -32.63412 -32.49287 -31.37288 -27.27383 -25.54127 -23.69763 -22.39679 -21.10581 -20.23908 -17.78353 -16.87811 -15.61178 -15.35948 -14.89748 -14.56328 -13.77929 -13.37708 -12.83424 -12.74004 -12.45812 -11.63752 -11.46492 -11.26559 -11.12798 -10.93932 -10.70583 -10.41838 -10.15160 -9.73370 -9.58097 -9.12792 -8.75334 -8.65587 -6.73471 -6.43050 -4.17549 2.32304 2.48884 3.19976 3.22340 3.27120 3.38534 3.62023 3.88544 4.03010 4.58935 4.78273 4.88028 4.96132 5.00780 5.05940 5.22031 5.59423 5.62108 5.74549 5.89602 6.11866 6.21579 6.41192 6.59073 6.79587 7.46510 7.61413 8.42539 9.09852 9.51717 10.64761 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.036400 B = 0.009391 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.041160 B = 2980.946431 C = 3666.494126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.141 3.859 3 N -0.296 5.296 4 N -0.306 5.306 5 C 0.165 3.835 6 S 0.139 5.861 7 C -0.541 4.541 8 H 0.104 0.896 9 C 0.076 3.924 10 N -0.881 5.881 11 Si 0.928 3.072 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.278 1.278 15 N -0.451 5.451 16 C 0.055 3.945 17 C -0.181 4.181 18 C -0.177 4.177 19 H 0.075 0.925 20 H 0.087 0.913 21 H 0.069 0.931 22 H 0.272 0.728 23 H 0.140 0.860 24 H 0.131 0.869 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.763 -5.164 -0.246 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.128 4.128 3 N -0.136 5.136 4 N -0.150 5.150 5 C -0.206 4.206 6 S 0.371 5.629 7 C -0.690 4.690 8 H 0.122 0.878 9 C -0.133 4.133 10 N -0.516 5.516 11 Si 0.754 3.246 12 H -0.189 1.189 13 H -0.204 1.204 14 H -0.204 1.204 15 N -0.147 5.147 16 C -0.050 4.050 17 C -0.220 4.220 18 C -0.215 4.215 19 H 0.094 0.906 20 H 0.105 0.895 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.157 0.843 24 H 0.148 0.852 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.964 -4.953 -0.249 12.034 hybrid contribution 0.210 0.678 0.028 0.710 sum -10.754 -4.275 -0.221 11.575 Atomic orbital electron populations 1.20012 0.84771 1.03557 1.02959 1.24680 0.96262 0.82970 1.08931 1.73918 0.97549 1.24336 1.17811 1.74732 1.10068 1.07566 1.22593 1.28318 0.91772 0.96051 1.04484 1.83187 0.85859 1.06621 1.87217 1.23472 0.91601 0.95763 1.58115 0.87827 1.25042 0.97799 0.96869 0.93564 1.69947 1.17311 1.16932 1.47456 0.85931 0.79624 0.81193 0.77863 1.18886 1.20408 1.20415 1.45766 1.05353 1.06125 1.57457 1.21851 0.98744 0.76731 1.07673 1.23834 1.01299 0.98873 0.97994 1.23457 1.03819 1.01112 0.93158 0.90603 0.89469 0.91174 0.91786 0.84255 0.85212 0.87224 0.87533 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.66 10.16 36.00 0.37 -0.29 15 2 C 0.14 2.68 8.06 -154.09 -1.24 1.44 15 3 N -0.30 -6.92 12.19 32.97 0.40 -6.52 15 4 N -0.31 -8.03 11.04 30.72 0.34 -7.70 15 5 C 0.16 3.96 7.87 -88.13 -0.69 3.27 15 6 S 0.14 3.47 17.40 -107.50 -1.87 1.60 15 7 C -0.54 -15.49 9.37 30.89 0.29 -15.20 15 8 H 0.10 3.10 6.93 -52.49 -0.36 2.74 15 9 C 0.08 2.10 5.49 -17.47 -0.10 2.00 15 10 N -0.88 -24.71 13.22 55.48 0.73 -23.98 15 11 Si 0.93 21.66 29.55 -169.99 -5.02 16.64 15 12 H -0.26 -6.26 7.11 56.52 0.40 -5.85 15 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 15 N -0.45 -8.77 3.15 -106.42 -0.34 -9.11 15 16 C 0.06 0.80 6.62 -67.92 -0.45 0.35 15 17 C -0.18 -2.59 9.71 -26.69 -0.26 -2.85 15 18 C -0.18 -2.37 10.02 -26.69 -0.27 -2.64 15 19 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 20 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.07 0.68 7.74 -51.93 -0.40 0.28 15 22 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 23 H 0.14 1.47 7.78 -51.93 -0.40 1.07 15 24 H 0.13 2.35 4.38 -28.43 -0.12 2.22 15 25 H 0.11 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.11 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.11 1.76 7.89 -51.93 -0.41 1.35 15 LS Contribution 250.79 15.07 3.78 3.78 Total: -1.00 -33.26 250.79 -6.86 -40.12 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -2.53 Total: -0.92 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.35 Total: -13.91 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 1.14 Total: -47.30 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.87 Total: 1.60 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.26 -6.86 -40.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306804221.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.025 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds