Wall clock time and date at job start Mon Mar 30 2020 02:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30497 * 126.31436 * 2 1 4 4 N 1.28538 * 110.05676 * 179.82607 * 3 2 1 5 5 C 1.31397 * 109.79884 * 0.44947 * 4 3 2 6 6 S 1.76201 * 126.49312 * 179.72872 * 5 4 3 7 7 C 1.76201 * 99.99715 * 0.02562 * 6 5 4 8 8 H 1.07993 * 120.00284 * 0.02562 * 7 6 5 9 9 C 1.38675 * 119.99777 * 179.97438 * 7 6 5 10 10 N 1.31637 * 119.99760 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00039 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47271 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47515 * 120.00126 * 11 9 7 14 14 H 1.48503 * 109.46973 * 240.00320 * 11 9 7 15 15 N 1.36481 * 126.31974 * 180.31867 * 2 1 3 16 16 C 1.46500 * 127.11521 * 359.95625 * 15 2 1 17 17 C 1.53005 * 117.49610 * 196.81908 * 16 15 2 18 18 C 1.53007 * 117.49605 * 128.16026 * 16 15 2 19 19 H 1.09000 * 109.46840 * 269.68841 * 1 2 3 20 20 H 1.08996 * 109.47252 * 29.68577 * 1 2 3 21 21 H 1.08998 * 109.47495 * 149.69104 * 1 2 3 22 22 H 0.97003 * 120.00004 * 179.97438 * 10 9 7 23 23 H 1.08999 * 115.55646 * 342.48819 * 16 15 2 24 24 H 1.09001 * 117.49957 * 359.97438 * 17 16 15 25 25 H 1.08999 * 117.49638 * 145.02389 * 17 16 15 26 26 H 1.08998 * 117.49535 * 214.97489 * 18 16 15 27 27 H 1.08994 * 117.49703 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2798 1.0515 0.0000 4 7 3.5138 0.6917 0.0037 5 6 3.5949 -0.6198 -0.0035 6 16 5.0735 -1.5781 -0.0088 7 6 6.2740 -0.2884 -0.0011 8 1 5.9574 0.7440 0.0053 9 6 7.6255 -0.5992 -0.0022 10 7 8.0114 -1.8577 -0.0084 11 14 8.8983 0.7680 0.0067 12 1 8.2108 2.0843 0.0135 13 1 9.7473 0.6462 1.2189 14 1 9.7486 0.6606 -1.2060 15 7 2.3153 -1.0996 -0.0061 16 6 1.8977 -2.5038 -0.0130 17 6 2.9417 -3.5533 0.3737 18 6 2.4994 -3.4145 -1.0852 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 0.8927 -0.5089 21 1 -0.3634 -0.8872 -0.5186 22 1 8.9568 -2.0751 -0.0095 23 1 0.8649 -2.6887 0.2826 24 1 3.9395 -3.1990 0.6328 25 1 2.5957 -4.4287 0.9233 26 1 1.8626 -4.1987 -1.4947 27 1 3.2056 -2.9688 -1.7856 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306804221.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:24 Heat of formation + Delta-G solvation = 74.158018 kcal Electronic energy + Delta-G solvation = -13167.542678 eV Core-core repulsion = 10859.880116 eV Total energy + Delta-G solvation = -2307.662562 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.68162 -38.53010 -34.73827 -33.96083 -32.82149 -28.74724 -27.59754 -25.14677 -23.50009 -22.66809 -21.71651 -19.66175 -18.38376 -17.16801 -17.01439 -16.91688 -15.74393 -15.17836 -14.99644 -14.31265 -13.81999 -13.53590 -13.23157 -13.03020 -12.97871 -12.81210 -12.60657 -12.35653 -12.01795 -11.66313 -11.49587 -11.30874 -10.70384 -10.63449 -10.36751 -8.66997 -8.51620 -6.29390 0.75583 0.75860 1.34039 1.34951 1.51016 1.79044 1.89515 2.11652 2.75844 2.87269 2.97348 3.42997 3.65963 3.82497 3.91523 4.11318 4.53527 4.68916 4.72549 4.76720 4.96165 5.04052 5.16978 5.18515 5.26159 5.46967 6.06709 6.21735 6.96636 7.81440 8.56751 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.036400 B = 0.009391 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.041160 B = 2980.946431 C = 3666.494126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.168 3.832 3 N -0.347 5.347 4 N -0.354 5.354 5 C 0.144 3.856 6 S 0.140 5.860 7 C -0.578 4.578 8 H 0.077 0.923 9 C 0.035 3.965 10 N -0.903 5.903 11 Si 0.989 3.011 12 H -0.277 1.277 13 H -0.263 1.263 14 H -0.264 1.264 15 N -0.447 5.447 16 C 0.042 3.958 17 C -0.189 4.189 18 C -0.166 4.166 19 H 0.102 0.898 20 H 0.097 0.903 21 H 0.108 0.892 22 H 0.280 0.720 23 H 0.193 0.807 24 H 0.089 0.911 25 H 0.151 0.849 26 H 0.154 0.846 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.059 -6.539 -0.202 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 N -0.187 5.187 4 N -0.198 5.198 5 C -0.230 4.230 6 S 0.371 5.629 7 C -0.726 4.726 8 H 0.095 0.905 9 C -0.171 4.171 10 N -0.540 5.540 11 Si 0.811 3.189 12 H -0.202 1.202 13 H -0.188 1.188 14 H -0.188 1.188 15 N -0.142 5.142 16 C -0.061 4.061 17 C -0.228 4.228 18 C -0.204 4.204 19 H 0.121 0.879 20 H 0.116 0.884 21 H 0.126 0.874 22 H 0.090 0.910 23 H 0.210 0.790 24 H 0.107 0.893 25 H 0.169 0.831 26 H 0.171 0.829 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.284 -6.349 -0.207 14.725 hybrid contribution 0.722 1.054 0.007 1.278 sum -12.562 -5.295 -0.200 13.634 Atomic orbital electron populations 1.20412 0.79424 1.05974 1.05402 1.25995 0.98702 0.81687 1.03865 1.73817 0.97127 1.26628 1.21143 1.74598 1.12203 1.09227 1.23770 1.28065 0.93194 0.95759 1.06019 1.82952 0.85755 1.05535 1.88617 1.23633 0.93713 0.95946 1.59336 0.90464 1.25838 0.99258 0.99188 0.92825 1.69987 1.18164 1.18248 1.47566 0.85051 0.77265 0.77684 0.78917 1.20156 1.18789 1.18824 1.46134 1.03642 1.08508 1.55900 1.22628 1.01026 0.73878 1.08547 1.23842 0.99253 1.00243 0.99418 1.23532 1.03380 1.01464 0.92054 0.87913 0.88419 0.87389 0.91043 0.78977 0.89322 0.83112 0.82854 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.06 10.16 71.23 0.72 -0.33 15 2 C 0.17 6.08 8.06 137.66 1.11 7.19 15 3 N -0.35 -16.47 12.19 -49.59 -0.60 -17.08 15 4 N -0.35 -19.41 11.04 -56.71 -0.63 -20.04 15 5 C 0.14 7.10 7.87 179.48 1.41 8.52 15 6 S 0.14 7.29 17.40 -56.49 -0.98 6.31 15 7 C -0.58 -34.72 9.37 67.92 0.64 -34.08 15 8 H 0.08 4.93 6.93 -2.91 -0.02 4.91 15 9 C 0.04 1.99 5.49 84.83 0.47 2.46 15 10 N -0.90 -51.62 13.22 21.63 0.29 -51.34 15 11 Si 0.99 45.38 29.55 68.60 2.03 47.41 15 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 13 H -0.26 -11.35 7.11 99.48 0.71 -10.64 15 14 H -0.26 -11.37 7.11 99.48 0.71 -10.67 15 15 N -0.45 -16.80 3.15 -490.61 -1.55 -18.35 15 16 C 0.04 1.06 6.62 45.00 0.30 1.35 15 17 C -0.19 -4.96 9.71 30.62 0.30 -4.66 15 18 C -0.17 -3.98 10.02 30.62 0.31 -3.67 15 19 H 0.10 1.61 8.14 -2.39 -0.02 1.59 15 20 H 0.10 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.11 1.39 7.74 -2.39 -0.02 1.37 15 22 H 0.28 14.71 8.31 -92.71 -0.77 13.94 15 23 H 0.19 2.79 7.78 -2.39 -0.02 2.77 15 24 H 0.09 3.22 4.38 -17.33 -0.08 3.14 15 25 H 0.15 2.66 8.14 -2.39 -0.02 2.64 15 26 H 0.15 2.23 8.14 -2.39 -0.02 2.21 15 27 H 0.07 2.35 7.89 -2.39 -0.02 2.33 15 Total: -1.00 -78.24 250.79 4.92 -73.31 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: 1.12 Total: 3.00 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 5.25 Total: -23.23 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -2.49 Total: -106.80 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 7.29 SS G_CDS: -0.98 Total: 6.31 kcal Total: -78.24 4.92 -73.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306804221.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.471 kcal (2) G-P(sol) polarization free energy of solvation -78.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds