Wall clock time and date at job start Mon Mar 30 2020 02:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46465 * 2 1 4 4 C 1.50704 * 109.46974 * 240.00100 * 2 1 3 5 5 H 1.08000 * 119.99799 * 239.99542 * 4 2 1 6 6 C 1.37875 * 119.99906 * 60.00020 * 4 2 1 7 7 N 1.31517 * 120.00180 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99994 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47329 * 59.99732 * 8 6 4 10 10 H 1.48498 * 109.47371 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47106 * 300.00077 * 8 6 4 12 12 N 1.46499 * 109.47327 * 120.00050 * 2 1 3 13 13 N 1.40105 * 119.99713 * 270.27806 * 12 2 1 14 14 C 1.29937 * 119.99333 * 179.72022 * 13 12 2 15 15 C 1.46865 * 119.99352 * 179.97438 * 14 13 12 16 16 C 1.35474 * 126.11854 * 180.02562 * 15 14 13 17 17 N 1.31396 * 114.13435 * 179.97438 * 16 15 14 18 18 C 1.29133 * 117.32750 * 359.97438 * 17 16 15 19 19 S 1.70938 * 110.43805 * 359.76249 * 18 17 16 20 20 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47461 * 299.99735 * 1 2 3 22 22 H 1.09000 * 109.47572 * 60.00611 * 1 2 3 23 23 H 0.96996 * 119.99825 * 180.02562 * 7 6 4 24 24 H 0.97001 * 119.99790 * 89.99709 * 12 2 1 25 25 H 1.07991 * 120.00740 * 0.02562 * 14 13 12 26 26 H 1.07997 * 122.93567 * 359.97438 * 16 15 14 27 27 H 1.08000 * 124.77597 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 7 2.0184 -0.6906 1.1961 13 7 2.2464 0.0290 2.3764 14 6 2.6743 -0.5845 3.4389 15 6 2.9138 0.1699 4.6760 16 6 3.3577 -0.3409 5.8496 17 7 3.4896 0.5491 6.8072 18 6 3.1893 1.7728 6.5247 19 16 2.6833 1.9028 4.8971 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 0.7081 1.1609 -3.4844 24 1 2.1800 -1.6467 1.1721 25 1 2.8547 -1.6489 3.4121 26 1 3.5834 -1.3881 5.9862 27 1 3.2533 2.5985 7.2179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308144574.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:01 Heat of formation + Delta-G solvation = 82.225809 kcal Electronic energy + Delta-G solvation = -12432.898317 eV Core-core repulsion = 10125.585601 eV Total energy + Delta-G solvation = -2307.312716 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.32392 -36.62964 -34.23977 -31.89026 -30.00993 -27.33306 -25.41649 -25.05351 -21.70607 -20.40083 -19.86098 -18.03261 -16.63048 -16.11418 -15.24069 -14.92622 -14.31111 -13.83041 -13.74935 -12.96828 -12.67594 -12.52434 -11.61210 -11.30729 -11.11103 -10.98200 -10.76030 -10.35068 -10.29633 -9.80256 -9.51951 -9.30577 -9.08273 -8.86661 -8.56789 -6.95213 -6.21001 -4.30138 0.63768 1.53107 1.99600 2.61134 3.21216 3.26212 3.27090 3.35753 3.59347 4.29782 4.50842 5.11553 5.25582 5.36042 5.50271 5.89826 6.29829 6.51166 6.78813 6.90421 7.04412 7.47377 7.66653 7.74633 7.83549 8.02327 8.17538 8.75526 9.10685 9.36903 10.84928 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.062742 B = 0.005046 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.163867 B = 5547.310174 C = 5715.130326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.295 3.705 3 H 0.044 0.956 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.611 5.611 13 N -0.187 5.187 14 C 0.008 3.992 15 C -0.129 4.129 16 C 0.018 3.982 17 N -0.467 5.467 18 C -0.023 4.023 19 S 0.168 5.832 20 H 0.027 0.973 21 H 0.013 0.987 22 H 0.092 0.908 23 H 0.266 0.734 24 H 0.372 0.628 25 H 0.119 0.881 26 H 0.175 0.825 27 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.444 0.176 12.036 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.193 3.807 3 H 0.062 0.938 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.347 5.347 13 N -0.003 5.003 14 C -0.200 4.200 15 C -0.253 4.253 16 C -0.139 4.139 17 N -0.180 5.180 18 C -0.320 4.320 19 S 0.420 5.580 20 H 0.046 0.954 21 H 0.032 0.968 22 H 0.110 0.890 23 H 0.076 0.924 24 H 0.208 0.792 25 H 0.136 0.864 26 H 0.192 0.808 27 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.872 2.027 11.249 11.583 hybrid contribution 0.732 -2.581 -0.529 2.735 sum 2.603 -0.554 10.720 11.046 Atomic orbital electron populations 1.22215 0.98742 0.99350 1.00724 1.18631 0.90329 0.93676 0.78060 0.93826 1.21168 1.32609 1.13459 0.90113 0.92147 1.24857 0.94729 0.94969 0.98988 1.69873 1.35748 1.22431 1.24189 0.86457 0.79211 0.79590 0.81569 1.20120 1.21006 1.20119 1.49159 1.71122 1.08062 1.06365 1.74037 1.03854 1.28297 0.94104 1.22363 1.10816 0.96589 0.90259 1.24133 1.07644 0.95889 0.97608 1.21951 1.04280 1.00568 0.87081 1.66122 1.17108 1.00825 1.33984 1.28293 1.05823 0.98114 0.99731 1.84343 1.60098 1.05502 1.08088 0.95401 0.96785 0.88961 0.92378 0.79159 0.86432 0.80795 0.78971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.29 37.16 0.35 -3.29 15 2 C 0.29 7.34 3.23 -69.08 -0.22 7.12 15 3 H 0.04 1.21 8.14 -51.93 -0.42 0.79 15 4 C -0.53 -14.04 8.74 -34.44 -0.30 -14.34 15 5 H 0.06 1.54 7.79 -52.49 -0.41 1.14 15 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 15 7 N -0.89 -24.23 11.32 55.43 0.63 -23.60 15 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 15 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 12 N -0.61 -13.09 6.10 -5.88 -0.04 -13.13 15 13 N -0.19 -3.73 11.31 32.04 0.36 -3.36 15 14 C 0.01 0.14 10.95 -14.86 -0.16 -0.02 15 15 C -0.13 -1.92 6.48 -37.08 -0.24 -2.16 15 16 C 0.02 0.24 11.33 -18.72 -0.21 0.03 15 17 N -0.47 -6.47 10.52 -15.39 -0.16 -6.63 15 18 C -0.02 -0.27 12.21 51.63 0.63 0.36 15 19 S 0.17 2.27 23.02 -107.50 -2.47 -0.20 15 20 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 15 22 H 0.09 2.39 6.07 -51.93 -0.32 2.08 15 23 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 24 H 0.37 7.29 8.58 -182.59 -1.57 5.72 15 25 H 0.12 1.66 8.02 -52.49 -0.42 1.24 15 26 H 0.18 1.90 8.06 -52.49 -0.42 1.48 15 27 H 0.19 1.58 8.06 -52.49 -0.42 1.16 15 LS Contribution 259.97 15.07 3.92 3.92 Total: -1.00 -28.45 259.97 -7.00 -35.45 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.96 Total: 2.78 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.26 Total: -10.61 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.79 Total: -46.72 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.47 Total: -0.20 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.45 -7.00 -35.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308144574.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.679 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds