Wall clock time and date at job start Mon Mar 30 2020 02:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46465 * 2 1 4 4 C 1.50704 * 109.46974 * 240.00100 * 2 1 3 5 5 H 1.08000 * 119.99799 * 239.99542 * 4 2 1 6 6 C 1.37875 * 119.99906 * 60.00020 * 4 2 1 7 7 N 1.31517 * 120.00180 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99994 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47329 * 59.99732 * 8 6 4 10 10 H 1.48498 * 109.47371 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47106 * 300.00077 * 8 6 4 12 12 N 1.46499 * 109.47327 * 120.00050 * 2 1 3 13 13 N 1.40105 * 119.99713 * 270.27806 * 12 2 1 14 14 C 1.29937 * 119.99333 * 179.72022 * 13 12 2 15 15 C 1.46865 * 119.99352 * 179.97438 * 14 13 12 16 16 C 1.35474 * 126.11854 * 180.02562 * 15 14 13 17 17 N 1.31396 * 114.13435 * 179.97438 * 16 15 14 18 18 C 1.29133 * 117.32750 * 359.97438 * 17 16 15 19 19 S 1.70938 * 110.43805 * 359.76249 * 18 17 16 20 20 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47461 * 299.99735 * 1 2 3 22 22 H 1.09000 * 109.47572 * 60.00611 * 1 2 3 23 23 H 0.96996 * 119.99825 * 180.02562 * 7 6 4 24 24 H 0.97001 * 119.99790 * 89.99709 * 12 2 1 25 25 H 1.07991 * 120.00740 * 0.02562 * 14 13 12 26 26 H 1.07997 * 122.93567 * 359.97438 * 16 15 14 27 27 H 1.08000 * 124.77597 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 7 2.0184 -0.6906 1.1961 13 7 2.2464 0.0290 2.3764 14 6 2.6743 -0.5845 3.4389 15 6 2.9138 0.1699 4.6760 16 6 3.3577 -0.3409 5.8496 17 7 3.4896 0.5491 6.8072 18 6 3.1893 1.7728 6.5247 19 16 2.6833 1.9028 4.8971 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 0.7081 1.1609 -3.4844 24 1 2.1800 -1.6467 1.1721 25 1 2.8547 -1.6489 3.4121 26 1 3.5834 -1.3881 5.9862 27 1 3.2533 2.5985 7.2179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308144574.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:01 Heat of formation + Delta-G solvation = 63.210656 kcal Electronic energy + Delta-G solvation = -12433.722876 eV Core-core repulsion = 10125.585601 eV Total energy + Delta-G solvation = -2308.137275 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.40196 -38.16629 -35.99029 -33.57918 -31.45335 -28.83426 -27.32723 -26.32335 -23.13289 -22.11485 -20.95417 -19.41116 -18.29228 -17.45680 -16.94460 -16.41165 -15.47247 -15.38101 -14.75129 -14.51712 -14.39231 -14.03972 -13.41475 -12.91794 -12.79261 -12.59117 -12.37570 -12.24522 -12.11359 -11.23471 -11.03480 -10.64169 -10.57404 -10.42493 -9.94998 -8.48058 -8.18901 -6.36528 -0.46126 0.47046 0.95170 1.42302 1.43721 1.44967 1.52656 2.08463 2.19099 2.44744 3.10055 3.55543 4.00903 4.31550 4.49175 4.63684 4.73317 4.96647 5.09443 5.19920 5.28028 5.50589 5.72702 5.83904 6.12922 6.36081 6.77546 6.80821 7.34904 7.66522 8.85778 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.062742 B = 0.005046 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.163867 B = 5547.310174 C = 5715.130326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.306 3.694 3 H 0.002 0.998 4 C -0.550 4.550 5 H 0.063 0.937 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.632 5.632 13 N -0.241 5.241 14 C 0.054 3.946 15 C -0.176 4.176 16 C 0.046 3.954 17 N -0.493 5.493 18 C 0.012 3.988 19 S 0.152 5.848 20 H 0.031 0.969 21 H 0.018 0.982 22 H 0.070 0.930 23 H 0.267 0.733 24 H 0.378 0.622 25 H 0.142 0.858 26 H 0.201 0.799 27 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -0.576 13.739 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.203 3.797 3 H 0.020 0.980 4 C -0.589 4.589 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.369 5.369 13 N -0.053 5.053 14 C -0.157 4.157 15 C -0.299 4.299 16 C -0.111 4.111 17 N -0.206 5.206 18 C -0.285 4.285 19 S 0.404 5.596 20 H 0.050 0.950 21 H 0.037 0.963 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.215 0.785 25 H 0.159 0.841 26 H 0.217 0.783 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.771 1.279 12.959 13.313 hybrid contribution 0.551 -2.273 -0.663 2.431 sum 3.322 -0.994 12.296 12.775 Atomic orbital electron populations 1.22031 0.98668 0.99198 0.99747 1.18157 0.90343 0.91682 0.79536 0.97980 1.21491 1.32703 1.13642 0.91080 0.91885 1.25702 0.94835 0.95617 1.01922 1.70005 1.36706 1.23683 1.24817 0.85430 0.78580 0.78687 0.77830 1.19221 1.20683 1.19807 1.48529 1.74050 1.07918 1.06409 1.74057 1.07805 1.28893 0.94513 1.22886 1.05467 0.97861 0.89523 1.24120 1.11506 0.96578 0.97745 1.22415 1.00881 1.01714 0.86058 1.66269 1.18731 1.01522 1.34051 1.29035 1.01812 0.98554 0.99061 1.84519 1.60185 1.05348 1.09574 0.94957 0.96334 0.91170 0.92334 0.78498 0.84094 0.78255 0.75099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.82 9.29 71.98 0.67 -6.15 15 2 C 0.31 15.83 3.23 44.25 0.14 15.98 15 3 H 0.00 0.13 8.14 -2.39 -0.02 0.12 15 4 C -0.55 -29.52 8.74 25.60 0.22 -29.29 15 5 H 0.06 3.25 7.79 -2.91 -0.02 3.23 15 6 C 0.02 1.06 5.30 84.65 0.45 1.51 15 7 N -0.91 -51.30 11.32 21.45 0.24 -51.06 15 8 Si 0.97 42.00 29.54 68.60 2.03 44.02 15 9 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 12 N -0.63 -27.68 6.10 -172.52 -1.05 -28.74 15 13 N -0.24 -9.67 11.31 -52.55 -0.59 -10.26 15 14 C 0.05 1.69 10.95 87.23 0.96 2.64 15 15 C -0.18 -4.88 6.48 23.89 0.15 -4.72 15 16 C 0.05 1.10 11.33 84.12 0.95 2.05 15 17 N -0.49 -11.85 10.52 -202.61 -2.13 -13.98 15 18 C 0.01 0.24 12.21 130.64 1.60 1.83 15 19 S 0.15 3.84 23.02 -56.49 -1.30 2.54 15 20 H 0.03 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.02 0.84 8.14 -2.39 -0.02 0.82 15 22 H 0.07 3.78 6.07 -2.39 -0.01 3.76 15 23 H 0.27 14.19 8.31 -92.71 -0.77 13.42 15 24 H 0.38 14.97 8.58 -213.32 -1.83 13.14 15 25 H 0.14 3.66 8.02 -2.91 -0.02 3.64 15 26 H 0.20 3.54 8.06 -2.91 -0.02 3.52 15 27 H 0.23 2.69 8.06 -2.91 -0.02 2.67 15 Total: -1.00 -62.06 259.97 1.69 -60.37 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -0.65 Total: 13.26 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 5.14 Total: -16.15 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -3.54 Total: -104.04 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.30 Total: 2.54 kcal Total: -62.06 1.69 -60.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308144574.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.581 kcal (2) G-P(sol) polarization free energy of solvation -62.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds