Wall clock time and date at job start Mon Mar 30 2020 02:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46959 * 2 1 4 4 C 1.50697 * 109.47121 * 240.00392 * 2 1 3 5 5 H 1.07999 * 120.00042 * 245.37391 * 4 2 1 6 6 C 1.37880 * 120.00068 * 65.36882 * 4 2 1 7 7 N 1.31515 * 120.00112 * 184.89539 * 6 4 2 8 8 Si 1.86803 * 119.99987 * 5.17178 * 6 4 2 9 9 H 1.48497 * 109.47063 * 269.72393 * 8 6 4 10 10 H 1.48497 * 109.46898 * 29.72148 * 8 6 4 11 11 H 1.48504 * 109.47060 * 149.72096 * 8 6 4 12 12 N 1.46499 * 109.47326 * 120.00156 * 2 1 3 13 13 N 1.40098 * 120.00069 * 270.00261 * 12 2 1 14 14 C 1.29731 * 119.99721 * 179.97438 * 13 12 2 15 15 C 1.47507 * 119.99796 * 179.97438 * 14 13 12 16 16 C 1.35186 * 123.02460 * 179.97438 * 15 14 13 17 17 S 1.76165 * 107.86410 * 179.97438 * 16 15 14 18 18 C 1.70904 * 90.47901 * 359.97438 * 17 16 15 19 19 N 1.28757 * 110.57462 * 359.75172 * 18 17 16 20 20 H 1.08998 * 109.47329 * 54.96531 * 1 2 3 21 21 H 1.08997 * 109.46920 * 174.97052 * 1 2 3 22 22 H 1.09000 * 109.47026 * 294.97019 * 1 2 3 23 23 H 0.97004 * 119.99708 * 355.27209 * 7 6 4 24 24 H 0.96999 * 119.99395 * 89.99351 * 12 2 1 25 25 H 1.07992 * 120.00433 * 359.97438 * 14 13 12 26 26 H 1.08007 * 126.06605 * 359.93998 * 16 15 14 27 27 H 1.07996 * 124.71308 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5798 -1.6362 -1.1338 6 6 1.7929 -0.1782 -2.4797 7 7 2.1460 -0.8447 -3.5571 8 14 0.9741 1.4930 -2.6418 9 1 -0.4987 1.3176 -2.7139 10 1 1.3160 2.3282 -1.4625 11 1 1.4541 2.1616 -3.8779 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0298 2.3748 14 6 2.6839 -0.5819 3.4341 15 6 2.9302 0.1768 4.6749 16 6 3.3794 -0.3981 5.8130 17 16 3.5315 0.8642 7.0324 18 6 2.9845 2.0328 5.9116 19 7 2.7373 1.4861 4.7724 20 1 -0.3634 0.5899 -0.8414 21 1 -0.3633 -1.0237 -0.0901 22 1 -0.3633 0.4338 0.9316 23 1 2.6358 -1.6777 -3.4732 24 1 2.1800 -1.6468 1.1720 25 1 2.8631 -1.6465 3.4076 26 1 3.6044 -1.4455 5.9505 27 1 2.8664 3.0843 6.1278 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388626101.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:04 Heat of formation + Delta-G solvation = 87.312056 kcal Electronic energy + Delta-G solvation = -12524.230298 eV Core-core repulsion = 10217.138138 eV Total energy + Delta-G solvation = -2307.092160 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.56427 -36.53079 -34.05673 -31.82861 -30.44630 -27.88199 -25.17955 -24.65717 -22.41659 -20.17199 -19.44791 -18.28827 -17.32764 -16.20550 -15.41017 -14.86799 -14.46474 -13.86499 -13.25445 -13.23011 -12.79809 -12.70173 -12.01088 -11.74717 -11.44462 -11.14041 -10.55671 -10.07263 -9.84126 -9.61641 -9.55861 -9.46969 -9.08335 -8.78962 -8.55602 -7.11789 -6.53872 -4.24164 0.65702 1.39500 1.70327 2.24258 3.34389 3.43249 3.56878 3.58437 3.63170 4.25909 4.40148 5.13880 5.20662 5.26358 5.41869 5.82752 6.07330 6.33460 6.47675 6.61700 6.63765 6.95830 7.33490 7.75112 7.85703 7.94707 8.25384 8.77467 9.12762 9.46585 10.84094 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.059566 B = 0.005131 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.955796 B = 5455.199688 C = 5679.516039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.268 3.732 3 H 0.044 0.956 4 C -0.608 4.608 5 H 0.060 0.940 6 C 0.035 3.965 7 N -0.905 5.905 8 Si 1.054 2.946 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.287 1.287 12 N -0.614 5.614 13 N -0.164 5.164 14 C 0.004 3.996 15 C 0.146 3.854 16 C -0.256 4.256 17 S 0.097 5.903 18 C 0.026 3.974 19 N -0.445 5.445 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.032 0.968 23 H 0.268 0.732 24 H 0.373 0.627 25 H 0.116 0.884 26 H 0.178 0.822 27 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 2.518 19.701 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.164 3.836 3 H 0.061 0.939 4 C -0.647 4.647 5 H 0.079 0.921 6 C -0.171 4.171 7 N -0.539 5.539 8 Si 0.883 3.117 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.351 5.351 13 N 0.021 4.979 14 C -0.207 4.207 15 C 0.015 3.985 16 C -0.399 4.399 17 S 0.347 5.653 18 C -0.274 4.274 19 N -0.159 5.159 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.209 0.791 25 H 0.133 0.867 26 H 0.196 0.804 27 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.651 4.981 18.591 19.257 hybrid contribution 0.721 -2.915 0.530 3.049 sum 1.373 2.065 19.120 19.281 Atomic orbital electron populations 1.22526 0.99674 1.00895 0.99026 1.19034 0.89544 0.94409 0.80590 0.93854 1.22195 1.40662 1.10816 0.91005 0.92136 1.25736 0.96287 1.03608 0.91445 1.70830 1.36185 1.16801 1.30102 0.83879 0.76378 0.75396 0.76067 1.20774 1.20050 1.21373 1.48847 1.71773 1.07946 1.06518 1.74118 1.02603 1.27485 0.93650 1.22710 1.11380 0.95989 0.90594 1.18512 0.99270 0.87667 0.93095 1.26875 1.13019 1.04270 0.95694 1.83834 1.62727 1.00666 1.18077 1.28390 1.02933 1.04844 0.91268 1.66357 1.16560 1.10235 1.22717 0.93138 0.93197 0.94860 0.92166 0.79061 0.86706 0.80435 0.78535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 9.11 37.16 0.34 -3.34 15 2 C 0.27 6.65 2.81 -69.08 -0.19 6.45 15 3 H 0.04 1.14 6.64 -51.93 -0.34 0.80 15 4 C -0.61 -16.95 9.10 -34.44 -0.31 -17.27 15 5 H 0.06 1.78 8.00 -52.49 -0.42 1.36 15 6 C 0.03 1.00 5.43 -17.82 -0.10 0.90 15 7 N -0.91 -27.51 13.70 55.43 0.76 -26.75 15 8 Si 1.05 25.45 25.28 -169.99 -4.30 21.15 15 9 H -0.28 -6.40 6.82 56.52 0.39 -6.01 15 10 H -0.27 -6.33 6.35 56.52 0.36 -5.97 15 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 12 N -0.61 -13.65 6.10 -5.88 -0.04 -13.69 15 13 N -0.16 -3.46 11.36 32.16 0.37 -3.10 15 14 C 0.00 0.07 10.87 -14.66 -0.16 -0.09 15 15 C 0.15 2.26 6.69 -84.80 -0.57 1.69 15 16 C -0.26 -2.97 11.21 29.65 0.33 -2.63 15 17 S 0.10 0.91 23.21 -107.50 -2.49 -1.59 15 18 C 0.03 0.30 12.19 51.47 0.63 0.92 15 19 N -0.45 -7.14 10.40 -12.42 -0.13 -7.27 15 20 H 0.05 1.13 4.41 -51.93 -0.23 0.90 15 21 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.03 0.70 8.14 -51.93 -0.42 0.27 15 23 H 0.27 8.09 8.72 -40.82 -0.36 7.73 15 24 H 0.37 7.69 8.56 -182.60 -1.56 6.12 15 25 H 0.12 1.67 8.02 -52.49 -0.42 1.25 15 26 H 0.18 1.57 8.06 -52.48 -0.42 1.15 15 27 H 0.20 1.55 8.06 -52.49 -0.42 1.13 15 LS Contribution 254.47 15.07 3.83 3.83 Total: -1.00 -31.95 254.47 -5.91 -37.86 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.88 Total: 2.91 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.03 Total: -13.37 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.96 Total: -50.80 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.30 Total: 21.15 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.95 -5.91 -37.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388626101.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.169 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds