Wall clock time and date at job start Mon Mar 30 2020 02:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46959 * 2 1 4 4 C 1.50697 * 109.47121 * 240.00392 * 2 1 3 5 5 H 1.07999 * 120.00042 * 245.37391 * 4 2 1 6 6 C 1.37880 * 120.00068 * 65.36882 * 4 2 1 7 7 N 1.31515 * 120.00112 * 184.89539 * 6 4 2 8 8 Si 1.86803 * 119.99987 * 5.17178 * 6 4 2 9 9 H 1.48497 * 109.47063 * 269.72393 * 8 6 4 10 10 H 1.48497 * 109.46898 * 29.72148 * 8 6 4 11 11 H 1.48504 * 109.47060 * 149.72096 * 8 6 4 12 12 N 1.46499 * 109.47326 * 120.00156 * 2 1 3 13 13 N 1.40098 * 120.00069 * 270.00261 * 12 2 1 14 14 C 1.29731 * 119.99721 * 179.97438 * 13 12 2 15 15 C 1.47507 * 119.99796 * 179.97438 * 14 13 12 16 16 C 1.35186 * 123.02460 * 179.97438 * 15 14 13 17 17 S 1.76165 * 107.86410 * 179.97438 * 16 15 14 18 18 C 1.70904 * 90.47901 * 359.97438 * 17 16 15 19 19 N 1.28757 * 110.57462 * 359.75172 * 18 17 16 20 20 H 1.08998 * 109.47329 * 54.96531 * 1 2 3 21 21 H 1.08997 * 109.46920 * 174.97052 * 1 2 3 22 22 H 1.09000 * 109.47026 * 294.97019 * 1 2 3 23 23 H 0.97004 * 119.99708 * 355.27209 * 7 6 4 24 24 H 0.96999 * 119.99395 * 89.99351 * 12 2 1 25 25 H 1.07992 * 120.00433 * 359.97438 * 14 13 12 26 26 H 1.08007 * 126.06605 * 359.93998 * 16 15 14 27 27 H 1.07996 * 124.71308 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5798 -1.6362 -1.1338 6 6 1.7929 -0.1782 -2.4797 7 7 2.1460 -0.8447 -3.5571 8 14 0.9741 1.4930 -2.6418 9 1 -0.4987 1.3176 -2.7139 10 1 1.3160 2.3282 -1.4625 11 1 1.4541 2.1616 -3.8779 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0298 2.3748 14 6 2.6839 -0.5819 3.4341 15 6 2.9302 0.1768 4.6749 16 6 3.3794 -0.3981 5.8130 17 16 3.5315 0.8642 7.0324 18 6 2.9845 2.0328 5.9116 19 7 2.7373 1.4861 4.7724 20 1 -0.3634 0.5899 -0.8414 21 1 -0.3633 -1.0237 -0.0901 22 1 -0.3633 0.4338 0.9316 23 1 2.6358 -1.6777 -3.4732 24 1 2.1800 -1.6468 1.1720 25 1 2.8631 -1.6465 3.4076 26 1 3.6044 -1.4455 5.9505 27 1 2.8664 3.0843 6.1278 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388626101.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:03 Heat of formation + Delta-G solvation = 62.903414 kcal Electronic energy + Delta-G solvation = -12525.288736 eV Core-core repulsion = 10217.138138 eV Total energy + Delta-G solvation = -2308.150598 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.57920 -38.13549 -35.86841 -33.72904 -31.68680 -29.37332 -26.86512 -26.03817 -23.76196 -22.03182 -20.53729 -19.95664 -18.84240 -17.50594 -16.71361 -16.41070 -15.53491 -15.41641 -14.88786 -14.58308 -14.47867 -14.07862 -13.87002 -13.43605 -12.82296 -12.54618 -12.43827 -11.91070 -11.65999 -11.10006 -10.93742 -10.72042 -10.49192 -10.39875 -10.07435 -8.91411 -8.51046 -6.51203 -0.26932 0.54986 0.79463 1.05238 1.41835 1.52484 1.69929 2.12270 2.40923 2.41296 3.01335 3.32108 4.13761 4.29026 4.46773 4.49543 4.55394 4.71302 4.77493 4.91342 5.10355 5.31969 5.49634 5.84415 5.88946 6.17383 6.61697 6.87673 7.27989 7.64789 8.56577 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.059566 B = 0.005131 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.955796 B = 5455.199688 C = 5679.516039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.276 3.724 3 H 0.025 0.975 4 C -0.607 4.607 5 H 0.030 0.970 6 C -0.013 4.013 7 N -0.935 5.935 8 Si 1.089 2.911 9 H -0.255 1.255 10 H -0.260 1.260 11 H -0.286 1.286 12 N -0.638 5.638 13 N -0.221 5.221 14 C 0.044 3.956 15 C 0.095 3.905 16 C -0.237 4.237 17 S 0.188 5.812 18 C 0.012 3.988 19 N -0.499 5.499 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.254 0.746 24 H 0.373 0.627 25 H 0.140 0.860 26 H 0.207 0.793 27 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 3.315 23.057 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.171 3.829 3 H 0.043 0.957 4 C -0.646 4.646 5 H 0.048 0.952 6 C -0.212 4.212 7 N -0.571 5.571 8 Si 0.910 3.090 9 H -0.180 1.180 10 H -0.185 1.185 11 H -0.212 1.212 12 N -0.375 5.375 13 N -0.032 5.032 14 C -0.169 4.169 15 C -0.037 4.037 16 C -0.381 4.381 17 S 0.440 5.560 18 C -0.287 4.287 19 N -0.214 5.214 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.210 0.790 25 H 0.157 0.843 26 H 0.224 0.776 27 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.555 5.775 21.987 22.740 hybrid contribution 0.948 -3.237 -0.061 3.374 sum 1.504 2.538 21.926 22.124 Atomic orbital electron populations 1.22388 0.98014 1.01032 0.99820 1.18649 0.90701 0.92942 0.80608 0.95670 1.22390 1.39585 1.09689 0.92905 0.95218 1.27089 0.96510 1.06342 0.91276 1.70945 1.38083 1.16957 1.31117 0.83467 0.77179 0.71745 0.76566 1.17999 1.18496 1.21235 1.48374 1.74594 1.07669 1.06850 1.74160 1.06881 1.27968 0.94148 1.23448 1.05765 0.97458 0.90186 1.18517 1.03389 0.88270 0.93548 1.27410 1.08926 1.06485 0.95257 1.83608 1.59815 0.97656 1.14907 1.28880 1.02080 1.06753 0.90974 1.66310 1.18754 1.10979 1.25373 0.92905 0.93272 0.93445 0.93638 0.78987 0.84333 0.77565 0.75849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.90 9.11 71.98 0.66 -6.25 15 2 C 0.28 13.93 2.81 44.25 0.12 14.05 15 3 H 0.03 1.36 6.64 -2.39 -0.02 1.34 15 4 C -0.61 -35.00 9.10 25.60 0.23 -34.77 15 5 H 0.03 1.84 8.00 -2.91 -0.02 1.82 15 6 C -0.01 -0.78 5.43 84.66 0.46 -0.32 15 7 N -0.94 -58.57 13.70 21.45 0.29 -58.28 15 8 Si 1.09 51.22 25.28 68.60 1.73 52.96 15 9 H -0.25 -10.89 6.82 99.48 0.68 -10.21 15 10 H -0.26 -11.56 6.35 99.48 0.63 -10.93 15 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 15 12 N -0.64 -28.99 6.10 -172.53 -1.05 -30.04 15 13 N -0.22 -9.38 11.36 -52.16 -0.59 -9.97 15 14 C 0.04 1.48 10.87 87.45 0.95 2.43 15 15 C 0.09 2.73 6.69 40.75 0.27 3.00 15 16 C -0.24 -4.58 11.21 67.12 0.75 -3.82 15 17 S 0.19 2.69 23.21 -56.49 -1.31 1.38 15 18 C 0.01 0.24 12.19 130.69 1.59 1.83 15 19 N -0.50 -15.26 10.40 -193.21 -2.01 -17.27 15 20 H 0.05 2.30 4.41 -2.39 -0.01 2.29 15 21 H 0.05 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.25 16.09 8.72 -92.71 -0.81 15.28 15 24 H 0.37 15.92 8.56 -213.32 -1.83 14.09 15 25 H 0.14 3.78 8.02 -2.91 -0.02 3.76 15 26 H 0.21 2.61 8.06 -2.91 -0.02 2.59 15 27 H 0.23 2.83 8.06 -2.91 -0.02 2.80 15 Total: -1.00 -72.07 254.47 1.33 -70.74 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -0.78 Total: 14.32 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 5.04 Total: -23.84 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -3.36 Total: -115.56 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 1.73 Total: 52.96 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.31 Total: 1.38 kcal Total: -72.07 1.33 -70.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388626101.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.645 kcal (2) G-P(sol) polarization free energy of solvation -72.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds