Wall clock time and date at job start Mon Mar 30 2020 02:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 N 1.40108 * 119.99907 * 89.99853 * 12 2 1 14 14 C 1.29731 * 119.99979 * 180.02562 * 13 12 2 15 15 C 1.47507 * 119.99940 * 180.02562 * 14 13 12 16 16 C 1.35184 * 123.02093 * 179.97438 * 15 14 13 17 17 S 1.76177 * 107.85696 * 179.97438 * 16 15 14 18 18 C 1.70894 * 90.47931 * 359.97438 * 17 16 15 19 19 N 1.28758 * 110.58170 * 359.75296 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 24 24 H 0.97002 * 120.00298 * 270.00357 * 12 2 1 25 25 H 1.07998 * 120.00338 * 0.02562 * 14 13 12 26 26 H 1.07994 * 126.07010 * 359.94149 * 16 15 14 27 27 H 1.08001 * 124.71061 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3748 14 6 2.6838 -0.5819 -3.4342 15 6 2.9301 0.1768 -4.6750 16 6 3.3802 -0.3979 -5.8128 17 16 3.5305 0.8642 -7.0327 18 6 2.9803 2.0320 -5.9129 19 7 2.7235 1.4838 -4.7765 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7082 1.1609 3.4844 24 1 2.1800 -1.6468 -1.1721 25 1 2.8630 -1.6465 -3.4077 26 1 3.6077 -1.4447 -5.9495 27 1 2.8608 3.0833 -6.1294 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388626108.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:05 Heat of formation + Delta-G solvation = 64.926777 kcal Electronic energy + Delta-G solvation = -12463.690335 eV Core-core repulsion = 10155.627476 eV Total energy + Delta-G solvation = -2308.062859 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.55081 -37.99382 -35.79743 -33.34641 -31.47609 -29.03991 -27.32765 -26.02651 -23.76591 -22.19573 -20.46365 -19.39692 -18.18487 -17.41055 -16.88845 -16.37269 -15.60745 -15.48925 -14.66865 -14.51604 -14.14420 -14.05708 -13.38104 -12.95675 -12.78742 -12.60557 -12.39748 -12.23132 -12.08343 -11.19703 -10.91866 -10.60379 -10.46314 -10.36708 -10.00738 -8.48561 -8.18280 -6.36517 -0.23902 0.57690 0.81317 1.11337 1.42451 1.45043 1.52972 2.18990 2.45940 2.47945 3.10141 3.36216 4.18187 4.36554 4.51983 4.63371 4.72940 4.95243 5.04022 5.10859 5.33127 5.51577 5.74019 5.84441 6.14332 6.38739 6.81513 6.92225 7.34969 7.78167 8.86787 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.069574 B = 0.004670 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.354840 B = 5994.415010 C = 6139.135825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.307 3.693 3 H -0.004 1.004 4 C -0.550 4.550 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.974 3.026 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.266 1.266 12 N -0.638 5.638 13 N -0.225 5.225 14 C 0.038 3.962 15 C 0.095 3.905 16 C -0.237 4.237 17 S 0.188 5.812 18 C 0.010 3.990 19 N -0.502 5.502 20 H 0.013 0.987 21 H 0.070 0.930 22 H 0.033 0.967 23 H 0.267 0.733 24 H 0.375 0.625 25 H 0.142 0.858 26 H 0.209 0.791 27 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -2.806 -18.315 19.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.204 3.796 3 H 0.014 0.986 4 C -0.589 4.589 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.190 1.190 12 N -0.376 5.376 13 N -0.036 5.036 14 C -0.175 4.175 15 C -0.037 4.037 16 C -0.380 4.380 17 S 0.439 5.561 18 C -0.289 4.289 19 N -0.217 5.217 20 H 0.033 0.967 21 H 0.088 0.912 22 H 0.052 0.948 23 H 0.077 0.923 24 H 0.212 0.788 25 H 0.159 0.841 26 H 0.226 0.774 27 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.892 -1.284 -18.208 18.898 hybrid contribution 0.145 -1.673 1.639 2.347 sum 5.036 -2.957 -16.569 17.568 Atomic orbital electron populations 1.22016 0.98764 0.99170 0.99538 1.18115 0.90309 0.91479 0.79729 0.98590 1.21499 1.32708 1.13615 0.91043 0.91806 1.25770 0.94835 0.95645 1.02077 1.70023 1.36787 1.23776 1.24816 0.85375 0.78558 0.78676 0.77574 1.19765 1.20602 1.19045 1.48602 1.74373 1.07747 1.06871 1.74182 1.06436 1.28550 0.94438 1.23441 1.06364 0.97467 0.90188 1.18579 1.03124 0.88254 0.93750 1.27399 1.09110 1.06457 0.95030 1.83546 1.59985 0.97664 1.14885 1.28863 1.02125 1.06718 0.91165 1.66321 1.18736 1.11225 1.25419 0.96744 0.91153 0.94791 0.92335 0.78770 0.84074 0.77380 0.76037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.16 9.29 71.98 0.67 -6.49 15 2 C 0.31 16.93 3.23 44.25 0.14 17.07 15 3 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 15 4 C -0.55 -30.77 8.74 25.60 0.22 -30.54 15 5 H 0.06 3.42 7.79 -2.91 -0.02 3.40 15 6 C 0.02 0.94 5.30 84.66 0.45 1.39 15 7 N -0.92 -53.30 11.32 21.45 0.24 -53.06 15 8 Si 0.97 43.20 29.54 68.60 2.03 45.22 15 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 11 H -0.27 -11.26 7.11 99.48 0.71 -10.56 15 12 N -0.64 -30.30 6.10 -172.53 -1.05 -31.35 15 13 N -0.23 -10.21 11.36 -52.16 -0.59 -10.80 15 14 C 0.04 1.34 10.87 87.45 0.95 2.29 15 15 C 0.09 2.91 6.69 40.75 0.27 3.19 15 16 C -0.24 -4.86 11.21 67.12 0.75 -4.11 15 17 S 0.19 2.94 23.21 -56.49 -1.31 1.63 15 18 C 0.01 0.22 12.19 130.69 1.59 1.81 15 19 N -0.50 -16.59 10.40 -193.21 -2.01 -18.60 15 20 H 0.01 0.70 8.14 -2.39 -0.02 0.68 15 21 H 0.07 3.98 6.07 -2.39 -0.01 3.96 15 22 H 0.03 1.67 8.14 -2.38 -0.02 1.65 15 23 H 0.27 14.65 8.31 -92.71 -0.77 13.88 15 24 H 0.37 15.93 8.58 -213.31 -1.83 14.10 15 25 H 0.14 3.97 8.02 -2.91 -0.02 3.95 15 26 H 0.21 2.79 8.06 -2.91 -0.02 2.77 15 27 H 0.22 3.30 8.06 -2.91 -0.02 3.27 15 Total: -1.00 -69.78 260.07 1.71 -68.07 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -0.65 Total: 14.27 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 5.05 Total: -15.39 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -3.41 Total: -113.81 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.31 Total: 1.63 kcal Total: -69.78 1.71 -68.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388626108.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.995 kcal (2) G-P(sol) polarization free energy of solvation -69.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds