Wall clock time and date at job start Mon Mar 30 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47177 * 2 1 4 4 C 1.50701 * 109.47227 * 119.99666 * 2 1 3 5 5 H 1.08001 * 120.00428 * 119.99241 * 4 2 1 6 6 C 1.37878 * 119.99871 * 300.00688 * 4 2 1 7 7 N 1.31520 * 120.00082 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00095 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47425 * 89.99385 * 8 6 4 10 10 H 1.48499 * 109.47206 * 209.99405 * 8 6 4 11 11 H 1.48495 * 109.47062 * 329.99175 * 8 6 4 12 12 N 1.46501 * 109.47564 * 239.99679 * 2 1 3 13 13 N 1.40093 * 119.99983 * 89.99633 * 12 2 1 14 14 C 1.30002 * 119.99794 * 180.02562 * 13 12 2 15 15 C 1.46751 * 120.00067 * 180.02562 * 14 13 12 16 16 N 1.30567 * 125.48488 * 359.95860 * 15 14 13 17 17 C 1.31278 * 116.96539 * 180.02562 * 16 15 14 18 18 C 1.33730 * 115.87991 * 0.02562 * 17 16 15 19 19 S 1.76169 * 125.48762 * 180.02562 * 15 14 13 20 20 H 1.09006 * 109.46763 * 60.00248 * 1 2 3 21 21 H 1.08998 * 109.47177 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47235 * 300.00843 * 1 2 3 23 23 H 0.96997 * 119.99642 * 180.02562 * 7 6 4 24 24 H 0.97007 * 119.99690 * 270.00404 * 12 2 1 25 25 H 1.08003 * 120.00321 * 0.02562 * 14 13 12 26 26 H 1.08004 * 122.06192 * 179.97438 * 17 16 15 27 27 H 1.08006 * 125.86706 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9433 0.8303 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 3.6295 -0.5457 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4856 -2.5660 3.7122 12 7 2.0184 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3747 14 6 2.6848 -0.5832 -3.4362 15 6 2.9299 0.1715 -4.6707 16 7 2.7495 1.4557 -4.8224 17 6 3.0220 1.9597 -6.0036 18 6 3.4563 1.0909 -6.9228 19 16 3.5134 -0.5096 -6.1870 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.7092 1.1618 3.4843 24 1 2.1800 -1.6469 -1.1720 25 1 2.8641 -1.6479 -3.4097 26 1 2.9020 3.0110 -6.2199 27 1 3.7255 1.3291 -7.9413 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393573023.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:07 Heat of formation + Delta-G solvation = 86.896673 kcal Electronic energy + Delta-G solvation = -12421.908910 eV Core-core repulsion = 10114.798737 eV Total energy + Delta-G solvation = -2307.110173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.17538 -36.55899 -34.13130 -31.74127 -29.93578 -27.61001 -25.44455 -25.00901 -22.04121 -20.47275 -19.14392 -17.90967 -16.83023 -15.76620 -15.46458 -14.95009 -14.26935 -14.04316 -13.26909 -13.10169 -12.58697 -12.49413 -11.54829 -11.39966 -11.07865 -10.94037 -10.69225 -10.29997 -10.26974 -9.73865 -9.44909 -9.34608 -9.10456 -8.85977 -8.53873 -7.01996 -6.18124 -4.27250 0.61721 1.38632 1.82806 2.56419 3.22368 3.28696 3.30620 3.47452 3.67015 4.31366 4.43376 5.14601 5.21960 5.39279 5.57978 5.84001 6.18428 6.54207 6.81842 6.95194 7.07954 7.50743 7.69262 7.76734 7.96500 8.04877 8.19442 8.78198 9.11689 9.39531 10.87886 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.063284 B = 0.004852 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.344077 B = 5769.830558 C = 5952.810696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.293 3.707 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.603 5.603 13 N -0.136 5.136 14 C -0.016 4.016 15 C 0.168 3.832 16 N -0.464 5.464 17 C 0.049 3.951 18 C -0.270 4.270 19 S 0.066 5.934 20 H 0.015 0.985 21 H 0.027 0.973 22 H 0.092 0.908 23 H 0.266 0.734 24 H 0.372 0.628 25 H 0.121 0.879 26 H 0.171 0.829 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -2.546 -14.600 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.191 3.809 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.341 5.341 13 N 0.044 4.956 14 C -0.225 4.225 15 C -0.107 4.107 16 N -0.181 5.181 17 C -0.103 4.103 18 C -0.410 4.410 19 S 0.317 5.683 20 H 0.034 0.966 21 H 0.046 0.954 22 H 0.111 0.889 23 H 0.076 0.924 24 H 0.208 0.792 25 H 0.138 0.862 26 H 0.188 0.812 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.382 -2.148 -13.828 14.397 hybrid contribution 0.492 -0.745 0.325 0.950 sum 3.874 -2.894 -13.503 14.343 Atomic orbital electron populations 1.22206 0.98567 0.99379 1.00881 1.18698 0.90468 0.93868 0.77861 0.93521 1.21201 1.32584 1.13458 0.90057 0.92044 1.24863 0.94731 0.94992 0.98994 1.69891 1.35765 1.22422 1.24070 0.86394 0.78628 0.79817 0.81953 1.20479 1.20977 1.19846 1.49402 1.69809 1.08184 1.06696 1.74271 1.00502 1.27396 0.93451 1.22289 1.13879 0.96012 0.90282 1.25310 0.99143 0.90713 0.95580 1.66859 1.19197 1.09794 1.22210 1.21741 0.99535 1.01637 0.87418 1.26831 1.14001 0.94797 1.05414 1.84792 1.64214 1.11636 1.07632 0.96603 0.95361 0.88920 0.92437 0.79168 0.86152 0.81220 0.80899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.29 37.15 0.35 -3.35 15 2 C 0.29 7.41 3.23 -69.08 -0.22 7.19 15 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 15 4 C -0.53 -14.12 8.74 -34.44 -0.30 -14.43 15 5 H 0.06 1.58 7.79 -52.49 -0.41 1.17 15 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 15 7 N -0.88 -24.47 11.32 55.43 0.63 -23.84 15 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 15 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 12 N -0.60 -13.17 6.10 -5.88 -0.04 -13.21 15 13 N -0.14 -2.87 11.43 32.02 0.37 -2.50 15 14 C -0.02 -0.28 11.03 -14.89 -0.16 -0.45 15 15 C 0.17 2.73 7.45 -14.65 -0.11 2.62 15 16 N -0.46 -8.02 10.52 -11.63 -0.12 -8.15 15 17 C 0.05 0.65 11.24 -19.37 -0.22 0.43 15 18 C -0.27 -2.99 11.35 29.15 0.33 -2.66 15 19 S 0.07 0.80 23.42 -107.50 -2.52 -1.72 15 20 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 15 21 H 0.03 0.65 8.14 -51.93 -0.42 0.22 15 22 H 0.09 2.44 6.07 -51.93 -0.32 2.12 15 23 H 0.27 6.96 8.31 -40.82 -0.34 6.63 15 24 H 0.37 7.28 8.58 -182.60 -1.57 5.72 15 25 H 0.12 1.72 8.03 -52.48 -0.42 1.30 15 26 H 0.17 1.77 8.06 -52.48 -0.42 1.35 15 27 H 0.17 1.33 8.06 -52.48 -0.42 0.91 15 LS Contribution 260.60 15.07 3.93 3.93 Total: -1.00 -29.11 260.60 -7.17 -36.28 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.96 Total: 2.63 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.43 Total: -8.93 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.84 Total: -47.70 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.52 Total: -1.72 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.11 -7.17 -36.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393573023.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.176 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds