Wall clock time and date at job start Mon Mar 30 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47177 * 2 1 4 4 C 1.50701 * 109.47227 * 119.99666 * 2 1 3 5 5 H 1.08001 * 120.00428 * 119.99241 * 4 2 1 6 6 C 1.37878 * 119.99871 * 300.00688 * 4 2 1 7 7 N 1.31520 * 120.00082 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00095 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47425 * 89.99385 * 8 6 4 10 10 H 1.48499 * 109.47206 * 209.99405 * 8 6 4 11 11 H 1.48495 * 109.47062 * 329.99175 * 8 6 4 12 12 N 1.46501 * 109.47564 * 239.99679 * 2 1 3 13 13 N 1.40093 * 119.99983 * 89.99633 * 12 2 1 14 14 C 1.30002 * 119.99794 * 180.02562 * 13 12 2 15 15 C 1.46751 * 120.00067 * 180.02562 * 14 13 12 16 16 N 1.30567 * 125.48488 * 359.95860 * 15 14 13 17 17 C 1.31278 * 116.96539 * 180.02562 * 16 15 14 18 18 C 1.33730 * 115.87991 * 0.02562 * 17 16 15 19 19 S 1.76169 * 125.48762 * 180.02562 * 15 14 13 20 20 H 1.09006 * 109.46763 * 60.00248 * 1 2 3 21 21 H 1.08998 * 109.47177 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47235 * 300.00843 * 1 2 3 23 23 H 0.96997 * 119.99642 * 180.02562 * 7 6 4 24 24 H 0.97007 * 119.99690 * 270.00404 * 12 2 1 25 25 H 1.08003 * 120.00321 * 0.02562 * 14 13 12 26 26 H 1.08004 * 122.06192 * 179.97438 * 17 16 15 27 27 H 1.08006 * 125.86706 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9433 0.8303 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 3.6295 -0.5457 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4856 -2.5660 3.7122 12 7 2.0184 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3747 14 6 2.6848 -0.5832 -3.4362 15 6 2.9299 0.1715 -4.6707 16 7 2.7495 1.4557 -4.8224 17 6 3.0220 1.9597 -6.0036 18 6 3.4563 1.0909 -6.9228 19 16 3.5134 -0.5096 -6.1870 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.7092 1.1618 3.4843 24 1 2.1800 -1.6469 -1.1720 25 1 2.8641 -1.6479 -3.4097 26 1 2.9020 3.0110 -6.2199 27 1 3.7255 1.3291 -7.9413 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393573023.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:07 Heat of formation + Delta-G solvation = 66.678991 kcal Electronic energy + Delta-G solvation = -12422.785614 eV Core-core repulsion = 10114.798737 eV Total energy + Delta-G solvation = -2307.986877 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.29268 -38.14285 -35.92013 -33.46956 -31.30344 -29.11121 -27.35465 -26.44776 -23.31354 -22.30840 -20.40223 -19.09914 -18.49213 -17.32466 -17.03655 -16.39517 -15.56796 -15.43832 -14.69546 -14.57054 -14.19909 -14.05182 -13.38853 -12.90739 -12.76373 -12.54321 -12.35455 -12.23729 -12.08579 -11.24094 -11.01215 -10.61034 -10.56228 -10.39581 -9.97183 -8.55401 -8.18503 -6.36095 -0.49569 0.31531 0.82380 1.34340 1.44185 1.44644 1.55382 2.13982 2.28147 2.46328 3.10924 3.30187 4.24827 4.39071 4.51026 4.63716 4.71520 4.96281 5.03386 5.10704 5.33044 5.50879 5.71861 5.83605 6.11380 6.34018 6.79879 6.91470 7.35107 7.65463 8.87044 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.063284 B = 0.004852 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.344077 B = 5769.830558 C = 5952.810696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.305 3.695 3 H 0.001 0.999 4 C -0.548 4.548 5 H 0.066 0.934 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.264 1.264 12 N -0.624 5.624 13 N -0.200 5.200 14 C 0.028 3.972 15 C 0.105 3.895 16 N -0.498 5.498 17 C 0.016 3.984 18 C -0.238 4.238 19 S 0.144 5.856 20 H 0.016 0.984 21 H 0.035 0.965 22 H 0.070 0.930 23 H 0.267 0.733 24 H 0.379 0.621 25 H 0.150 0.850 26 H 0.191 0.809 27 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.955 -3.818 -16.981 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.201 3.799 3 H 0.019 0.981 4 C -0.587 4.587 5 H 0.084 0.916 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.797 3.203 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.188 1.188 12 N -0.363 5.363 13 N -0.016 5.016 14 C -0.184 4.184 15 C -0.169 4.169 16 N -0.216 5.216 17 C -0.135 4.135 18 C -0.378 4.378 19 S 0.395 5.605 20 H 0.035 0.965 21 H 0.054 0.946 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.217 0.783 25 H 0.167 0.833 26 H 0.208 0.792 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.623 -3.432 -16.211 17.203 hybrid contribution 0.238 -0.313 0.592 0.711 sum 4.860 -3.745 -15.619 16.781 Atomic orbital electron populations 1.22022 0.98507 0.99379 0.99718 1.18212 0.90494 0.91717 0.79481 0.98145 1.21513 1.32674 1.13653 0.90883 0.91594 1.25746 0.94816 0.95645 1.02039 1.70028 1.36789 1.23759 1.24770 0.85332 0.77893 0.78996 0.78030 1.20297 1.20549 1.18783 1.48716 1.72930 1.08067 1.06549 1.74276 1.04639 1.28455 0.94218 1.22960 1.08337 0.97491 0.89582 1.25320 1.02995 0.91345 0.97278 1.66817 1.18973 1.11082 1.24726 1.22097 1.01287 1.03223 0.86901 1.27501 1.09707 0.94002 1.06598 1.84537 1.61292 1.10833 1.03829 0.96536 0.94587 0.91105 0.92347 0.78275 0.83271 0.79183 0.76668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.00 9.29 71.98 0.67 -6.33 15 2 C 0.30 16.20 3.23 44.24 0.14 16.34 15 3 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 4 C -0.55 -29.81 8.74 25.60 0.22 -29.59 15 5 H 0.07 3.43 7.79 -2.91 -0.02 3.41 15 6 C 0.02 0.97 5.30 84.65 0.45 1.42 15 7 N -0.92 -52.29 11.32 21.45 0.24 -52.05 15 8 Si 0.97 42.45 29.54 68.60 2.03 44.48 15 9 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 11 H -0.26 -10.98 7.11 99.48 0.71 -10.28 15 12 N -0.62 -28.30 6.10 -172.53 -1.05 -29.35 15 13 N -0.20 -8.71 11.43 -52.60 -0.60 -9.32 15 14 C 0.03 0.94 11.03 87.19 0.96 1.90 15 15 C 0.11 3.26 7.45 87.11 0.65 3.91 15 16 N -0.50 -16.82 10.52 -190.69 -2.01 -18.82 15 17 C 0.02 0.39 11.24 83.75 0.94 1.34 15 18 C -0.24 -4.18 11.35 66.80 0.76 -3.42 15 19 S 0.14 2.90 23.42 -56.49 -1.32 1.57 15 20 H 0.02 0.78 8.14 -2.38 -0.02 0.76 15 21 H 0.03 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.07 3.90 6.07 -2.39 -0.01 3.89 15 23 H 0.27 14.38 8.31 -92.71 -0.77 13.61 15 24 H 0.38 15.23 8.58 -213.32 -1.83 13.40 15 25 H 0.15 4.01 8.03 -2.91 -0.02 3.99 15 26 H 0.19 3.54 8.06 -2.91 -0.02 3.51 15 27 H 0.22 1.91 8.06 -2.91 -0.02 1.89 15 Total: -1.00 -65.93 260.60 1.43 -64.50 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -0.65 Total: 13.43 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.79 Total: -14.43 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -3.42 Total: -109.55 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.32 Total: 1.57 kcal Total: -65.93 1.43 -64.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393573023.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.175 kcal (2) G-P(sol) polarization free energy of solvation -65.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds