Wall clock time and date at job start Mon Mar 30 2020 02:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47161 * 2 1 4 4 C 1.38329 * 120.14800 * 269.97762 * 3 2 1 5 5 N 1.39681 * 119.94579 * 0.02562 * 4 3 2 6 6 C 1.39272 * 120.10875 * 180.02562 * 4 3 2 7 7 C 1.38638 * 120.41166 * 0.02562 * 6 4 3 8 8 Cl 1.73598 * 119.84956 * 179.97438 * 7 6 4 9 9 C 1.37766 * 120.29523 * 359.66988 * 7 6 4 10 10 C 1.40570 * 120.14916 * 90.00057 * 3 2 1 11 11 C 1.41406 * 120.20158 * 359.97438 * 10 3 2 12 12 H 1.08006 * 119.99988 * 334.57494 * 11 10 3 13 13 C 1.39925 * 120.00163 * 154.57969 * 11 10 3 14 14 N 1.30831 * 119.99766 * 334.65529 * 13 11 10 15 15 Si 1.86805 * 120.00256 * 154.65801 * 13 11 10 16 16 H 1.48497 * 109.46897 * 179.97438 * 15 13 11 17 17 H 1.48498 * 109.46802 * 299.99637 * 15 13 11 18 18 H 1.48503 * 109.46977 * 59.99565 * 15 13 11 19 19 H 1.08999 * 109.47188 * 59.99882 * 1 2 3 20 20 H 1.08992 * 109.47170 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47087 * 300.00467 * 1 2 3 22 22 H 1.08998 * 109.46773 * 240.00128 * 2 1 3 23 23 H 1.08999 * 109.47188 * 120.00118 * 2 1 3 24 24 H 0.97000 * 119.99981 * 0.02562 * 5 4 3 25 25 H 0.96999 * 119.99886 * 179.97438 * 5 4 3 26 26 H 1.07999 * 119.78934 * 179.97438 * 6 4 3 27 27 H 1.08002 * 120.05810 * 180.32374 * 9 7 6 28 28 H 0.97001 * 120.00012 * 354.17948 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2644 2.0757 -1.1962 5 7 2.0322 1.4191 -2.4070 6 6 2.7291 3.3886 -1.1952 7 6 2.9634 4.0492 0.0009 8 17 3.5433 5.6854 -0.0150 9 6 2.7320 3.4152 1.2019 10 6 2.2677 2.0865 1.2155 11 6 2.0340 1.4271 2.4445 12 1 1.3213 0.6172 2.4958 13 6 2.7261 1.8240 3.5940 14 7 3.8900 2.4118 3.4867 15 14 1.9882 1.5145 5.2820 16 1 2.9118 2.0244 6.3270 17 1 0.6839 2.2164 5.3883 18 1 1.7825 0.0562 5.4725 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.7081 0.5048 -2.4086 25 1 2.1943 1.8777 -3.2462 26 1 2.9090 3.8948 -2.1321 27 1 2.9108 3.9353 2.1314 28 1 4.3120 2.4968 2.6174 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715406.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:05 Heat of formation + Delta-G solvation = -30.530862 kcal Electronic energy + Delta-G solvation = -13366.866178 eV Core-core repulsion = 11020.327508 eV Total energy + Delta-G solvation = -2346.538670 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.18038 -37.38356 -36.48144 -34.54387 -33.90843 -30.39740 -28.75760 -27.11941 -24.34265 -22.74959 -21.29351 -19.71676 -17.97358 -17.25854 -16.33566 -15.78654 -15.48337 -15.01060 -14.68176 -14.32177 -14.12788 -13.72873 -13.36222 -12.88607 -12.81734 -12.49974 -12.31513 -12.03306 -11.92588 -11.71634 -11.41182 -11.14688 -11.02920 -10.61207 -9.37637 -9.10369 -8.13799 -6.42278 0.81507 1.09184 1.44003 1.53847 1.67908 1.81661 2.36467 2.70476 3.30153 3.55114 4.31777 4.38996 4.58868 4.75266 4.80692 4.95707 5.03626 5.13717 5.21627 5.38931 5.54427 5.67979 5.74091 5.79593 5.90304 6.15603 6.28773 6.72012 6.87520 7.05119 7.25670 8.09722 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.012916 C = 0.008315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.401385 B = 2167.331513 C = 3366.534096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 C -0.276 4.276 4 C 0.255 3.745 5 N -0.868 5.868 6 C -0.312 4.312 7 C 0.036 3.964 8 Cl -0.104 7.104 9 C -0.272 4.272 10 C 0.114 3.886 11 C -0.535 4.535 12 H 0.084 0.916 13 C 0.003 3.997 14 N -0.815 5.815 15 Si 1.111 2.889 16 H -0.276 1.276 17 H -0.266 1.266 18 H -0.254 1.254 19 H 0.050 0.950 20 H 0.068 0.932 21 H 0.034 0.966 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.401 0.599 25 H 0.400 0.600 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 -2.955 -5.550 7.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.084 4.084 3 C -0.283 4.283 4 C 0.150 3.850 5 N -0.410 5.410 6 C -0.336 4.336 7 C 0.009 3.991 8 Cl -0.075 7.075 9 C -0.294 4.294 10 C 0.110 3.890 11 C -0.563 4.563 12 H 0.102 0.898 13 C -0.214 4.214 14 N -0.438 5.438 15 Si 0.929 3.071 16 H -0.201 1.201 17 H -0.191 1.191 18 H -0.178 1.178 19 H 0.069 0.931 20 H 0.087 0.913 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.231 0.769 25 H 0.229 0.771 26 H 0.136 0.864 27 H 0.107 0.893 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.643 -2.512 -3.924 5.915 hybrid contribution 0.121 0.216 -1.929 1.945 sum -3.522 -2.296 -5.853 7.207 Atomic orbital electron populations 1.21655 0.95360 1.01191 1.00895 1.19923 0.95573 0.92330 1.00552 1.19497 1.19722 0.98157 0.90902 1.17155 0.91149 0.90094 0.86567 1.42285 1.77248 1.17365 1.04138 1.19833 1.22032 0.96098 0.95623 1.20453 0.99576 0.84014 0.95046 1.98253 1.87754 1.22474 1.99058 1.20817 1.17096 0.96525 0.94935 1.17466 0.88084 0.89998 0.93403 1.20702 1.23408 1.18049 0.94114 0.89846 1.28348 0.93504 0.90693 1.08876 1.70552 1.13015 1.29743 1.30509 0.83081 0.75967 0.78650 0.69447 1.20100 1.19063 1.17838 0.93113 0.91348 0.94640 0.91888 0.93260 0.76854 0.77081 0.86359 0.89271 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.88 71.98 0.71 -3.66 15 2 C -0.05 -1.74 5.01 29.85 0.15 -1.59 15 3 C -0.28 -12.45 5.21 -19.27 -0.10 -12.55 15 4 C 0.26 10.41 6.72 38.16 0.26 10.67 15 5 N -0.87 -25.85 8.99 -51.50 -0.46 -26.31 15 6 C -0.31 -13.38 9.68 22.61 0.22 -13.16 15 7 C 0.04 1.70 6.31 22.25 0.14 1.84 15 8 Cl -0.10 -4.28 28.94 -2.72 -0.08 -4.36 15 9 C -0.27 -14.30 7.72 22.78 0.18 -14.13 15 10 C 0.11 5.93 5.29 -21.31 -0.11 5.82 15 11 C -0.53 -27.66 8.06 23.46 0.19 -27.47 15 12 H 0.08 4.14 6.64 -2.91 -0.02 4.12 15 13 C 0.00 0.14 4.94 85.25 0.42 0.56 15 14 N -0.82 -44.40 12.32 21.82 0.27 -44.13 15 15 Si 1.11 42.95 30.00 68.60 2.06 45.01 15 16 H -0.28 -10.67 7.11 99.48 0.71 -9.97 15 17 H -0.27 -9.82 7.11 99.48 0.71 -9.12 15 18 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 19 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.03 1.30 7.88 -2.38 -0.02 1.28 15 22 H 0.06 2.01 6.54 -2.39 -0.02 1.99 15 23 H 0.05 2.02 6.77 -2.39 -0.02 2.00 15 24 H 0.40 10.43 6.80 -92.71 -0.63 9.80 15 25 H 0.40 9.82 8.84 -92.71 -0.82 9.00 15 26 H 0.12 4.50 8.06 -2.91 -0.02 4.48 15 27 H 0.09 5.02 6.50 -2.91 -0.02 5.01 15 28 H 0.28 16.22 6.69 -92.71 -0.62 15.60 15 Total: -1.00 -57.83 251.38 3.73 -54.09 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.10 Total: 29.36 kcal Atomic # 6 Polarization: -55.71 SS G_CDS: 2.05 Total: -53.66 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -0.19 Total: -70.44 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.06 Total: 45.01 kcal Atomic # 17 Polarization: -4.28 SS G_CDS: -0.08 Total: -4.36 kcal Total: -57.83 3.73 -54.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715406.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.563 kcal (2) G-P(sol) polarization free energy of solvation -57.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds