Wall clock time and date at job start Mon Mar 30 2020 02:37:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50700 * 109.47388 * 2 1
4 4 C 1.38902 * 119.69919 * 269.97967 * 3 2 1
5 5 C 1.38237 * 120.61695 * 179.76107 * 4 3 2
6 6 Cl 1.73603 * 120.00005 * 180.27602 * 5 4 3
7 7 C 1.38863 * 120.00227 * 0.51228 * 5 4 3
8 8 N 1.38801 * 120.29350 * 179.76949 * 7 5 4
9 9 C 1.41493 * 119.40407 * 359.48941 * 7 5 4
10 10 C 1.41054 * 120.30093 * 180.22902 * 9 7 5
11 11 H 1.07996 * 120.00023 * 28.68381 * 10 9 7
12 12 C 1.39920 * 120.00326 * 208.67272 * 10 9 7
13 13 N 1.30886 * 120.00006 * 12.57767 * 12 10 9
14 14 Si 1.86798 * 120.00411 * 192.57296 * 12 10 9
15 15 H 1.48497 * 109.47345 * 59.99992 * 14 12 10
16 16 H 1.48503 * 109.47247 * 180.02562 * 14 12 10
17 17 H 1.48505 * 109.46848 * 300.00191 * 14 12 10
18 18 C 1.36442 * 119.69568 * 89.99332 * 3 2 1
19 19 H 1.08995 * 109.47240 * 179.97438 * 1 2 3
20 20 H 1.08997 * 109.47518 * 300.00783 * 1 2 3
21 21 H 1.09005 * 109.46877 * 60.00357 * 1 2 3
22 22 H 1.09001 * 109.47681 * 239.99941 * 2 1 3
23 23 H 1.09005 * 109.46877 * 119.99643 * 2 1 3
24 24 H 1.08000 * 119.69025 * 0.02562 * 4 3 2
25 25 H 0.96998 * 119.99585 * 174.32539 * 8 7 5
26 26 H 0.96993 * 120.00624 * 354.32076 * 8 7 5
27 27 H 0.96996 * 120.00359 * 174.98051 * 13 12 10
28 28 H 1.07996 * 120.01609 * 0.02562 * 18 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.2622 2.0695 -1.2066
5 6 2.7183 3.3742 -1.2287
6 17 2.9934 4.1720 -2.7459
7 6 2.9612 4.0452 -0.0375
8 7 3.4238 5.3538 -0.0527
9 6 2.7272 3.3850 1.1919
10 6 2.9629 4.0503 2.4132
11 1 2.8673 5.1245 2.4701
12 6 3.3203 3.3185 3.5509
13 7 3.6756 2.0639 3.4372
14 14 3.2906 4.1320 5.2322
15 1 1.9150 4.6064 5.5284
16 1 3.7092 3.1501 6.2647
17 1 4.2248 5.2864 5.2400
18 6 2.2576 2.0581 1.1852
19 1 -0.3633 -1.0276 -0.0005
20 1 -0.3634 0.5139 0.8899
21 1 -0.3633 0.5138 -0.8901
22 1 1.8934 -0.5138 -0.8900
23 1 1.8933 -0.5138 0.8901
24 1 2.0788 1.5510 -2.1361
25 1 3.5137 5.8460 0.7783
26 1 3.6573 5.7760 -0.8941
27 1 3.9929 1.5773 4.2140
28 1 2.0763 1.5445 2.1178
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000575715430.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:37:57
Heat of formation + Delta-G solvation = -24.359610 kcal
Electronic energy + Delta-G solvation = -13226.905718 eV
Core-core repulsion = 10880.634653 eV
Total energy + Delta-G solvation = -2346.271065 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 225.062 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-39.95369 -37.16462 -36.17441 -35.25282 -32.85028 -31.24790 -28.64899 -27.00642
-23.97472 -23.11688 -21.20034 -18.85357 -17.83431 -17.52330 -16.51141 -15.98979
-15.24328 -14.72043 -14.55453 -14.27239 -14.03878 -13.70919 -13.20638 -13.07546
-12.80264 -12.50432 -12.21998 -12.05112 -11.97555 -11.67754 -11.48575 -11.14118
-10.98104 -10.77665 -9.16556 -8.52698 -8.06440 -6.11741 0.93759 1.17109
1.42145 1.51627 1.53154 1.60602 2.25754 2.79959 3.50652 3.69077
4.29209 4.37070 4.64116 4.71841 4.96111 5.00318 5.08561 5.15115
5.30677 5.36182 5.49544 5.57372 5.67567 5.96817 6.25623 6.28188
6.60985 6.89237 6.97022 7.17587 7.39336 8.47496
Molecular weight = 225.06amu
Principal moments of inertia in cm(-1)
A = 0.023393 B = 0.010947 C = 0.007816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1196.664285 B = 2557.146200 C = 3581.484677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.069 4.069
3 C -0.109 4.109
4 C -0.181 4.181
5 C -0.097 4.097
6 Cl -0.098 7.098
7 C 0.119 3.881
8 N -0.869 5.869
9 C 0.037 3.963
10 C -0.489 4.489
11 H 0.078 0.922
12 C 0.033 3.967
13 N -0.837 5.837
14 Si 0.979 3.021
15 H -0.264 1.264
16 H -0.275 1.275
17 H -0.261 1.261
18 C -0.147 4.147
19 H 0.073 0.927
20 H 0.039 0.961
21 H 0.053 0.947
22 H 0.072 0.928
23 H 0.055 0.945
24 H 0.117 0.883
25 H 0.397 0.603
26 H 0.392 0.608
27 H 0.283 0.717
28 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.311 0.420 -3.398 4.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.107 4.107
3 C -0.111 4.111
4 C -0.201 4.201
5 C -0.129 4.129
6 Cl -0.070 7.070
7 C 0.015 3.985
8 N -0.412 5.412
9 C 0.032 3.968
10 C -0.520 4.520
11 H 0.096 0.904
12 C -0.180 4.180
13 N -0.464 5.464
14 Si 0.801 3.199
15 H -0.188 1.188
16 H -0.199 1.199
17 H -0.186 1.186
18 C -0.168 4.168
19 H 0.092 0.908
20 H 0.058 0.942
21 H 0.072 0.928
22 H 0.091 0.909
23 H 0.073 0.927
24 H 0.135 0.865
25 H 0.226 0.774
26 H 0.221 0.779
27 H 0.093 0.907
28 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -2.279 0.224 -3.381 4.083
hybrid contribution 0.427 0.718 0.625 1.044
sum -1.851 0.942 -2.756 3.451
Atomic orbital electron populations
1.21661 0.94378 1.01830 1.01306 1.20365 0.96521 0.92176 1.01613
1.19339 1.02642 0.96799 0.92283 1.20183 1.09415 0.93240 0.97287
1.20180 1.13887 0.95382 0.83454 1.98217 1.95789 1.80673 1.32339
1.17879 1.01002 0.87786 0.91856 1.41837 1.76804 1.11705 1.10840
1.17502 0.94942 0.93440 0.90894 1.19355 1.44135 0.94950 0.93592
0.90440 1.26571 0.92336 0.95009 1.04050 1.69866 1.32705 1.10713
1.33139 0.85286 0.79540 0.78666 0.76369 1.18844 1.19926 1.18582
1.20754 1.03340 0.96087 0.96631 0.90845 0.94181 0.92782 0.90934
0.92663 0.86475 0.77380 0.77919 0.90687 0.87799
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.17 9.89 71.98 0.71 -3.46 15
2 C -0.07 -2.51 6.04 29.85 0.18 -2.33 15
3 C -0.11 -4.87 5.10 -20.12 -0.10 -4.97 15
4 C -0.18 -7.83 9.46 22.43 0.21 -7.62 15
5 C -0.10 -4.29 6.33 22.42 0.14 -4.14 15
6 Cl -0.10 -3.58 27.61 -2.72 -0.08 -3.65 15
7 C 0.12 5.62 6.79 38.99 0.26 5.88 15
8 N -0.87 -34.87 8.92 -50.32 -0.45 -35.32 15
9 C 0.04 1.95 5.56 -21.17 -0.12 1.83 15
10 C -0.49 -25.17 8.48 23.37 0.20 -24.98 15
11 H 0.08 3.74 6.73 -2.91 -0.02 3.73 15
12 C 0.03 1.64 5.22 85.24 0.44 2.08 15
13 N -0.84 -43.39 10.93 21.83 0.24 -43.15 15
14 Si 0.98 37.88 29.58 68.60 2.03 39.91 15
15 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15
16 H -0.27 -10.28 7.11 99.48 0.71 -9.57 15
17 H -0.26 -9.73 7.11 99.48 0.71 -9.03 15
18 C -0.15 -7.53 8.22 22.47 0.18 -7.34 15
19 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15
20 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15
21 H 0.05 1.62 8.14 -2.38 -0.02 1.60 15
22 H 0.07 2.33 8.08 -2.39 -0.02 2.31 15
23 H 0.05 2.05 8.07 -2.38 -0.02 2.03 15
24 H 0.12 4.51 8.06 -2.91 -0.02 4.48 15
25 H 0.40 15.35 7.10 -92.71 -0.66 14.69 15
26 H 0.39 13.83 7.52 -92.71 -0.70 13.13 15
27 H 0.28 13.49 8.30 -92.71 -0.77 12.73 15
28 H 0.10 5.63 6.27 -2.91 -0.02 5.61 15
Total: -1.00 -55.46 254.00 3.70 -51.76
By element:
Atomic # 1 Polarization: 35.67 SS G_CDS: -0.16 Total: 35.50 kcal
Atomic # 6 Polarization: -47.16 SS G_CDS: 2.12 Total: -45.04 kcal
Atomic # 7 Polarization: -78.26 SS G_CDS: -0.21 Total: -78.47 kcal
Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal
Atomic # 17 Polarization: -3.58 SS G_CDS: -0.08 Total: -3.65 kcal
Total: -55.46 3.70 -51.76 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000575715430.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.398 kcal
(2) G-P(sol) polarization free energy of solvation -55.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.059 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.757 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.360 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds