Wall clock time and date at job start Mon Mar 30 2020 02:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47388 * 2 1 4 4 C 1.38902 * 119.69919 * 269.97967 * 3 2 1 5 5 C 1.38237 * 120.61695 * 179.76107 * 4 3 2 6 6 Cl 1.73603 * 120.00005 * 180.27602 * 5 4 3 7 7 C 1.38863 * 120.00227 * 0.51228 * 5 4 3 8 8 N 1.38801 * 120.29350 * 179.76949 * 7 5 4 9 9 C 1.41493 * 119.40407 * 359.48941 * 7 5 4 10 10 C 1.41054 * 120.30093 * 180.22902 * 9 7 5 11 11 H 1.07996 * 120.00023 * 28.68381 * 10 9 7 12 12 C 1.39920 * 120.00326 * 208.67272 * 10 9 7 13 13 N 1.30886 * 120.00006 * 12.57767 * 12 10 9 14 14 Si 1.86798 * 120.00411 * 192.57296 * 12 10 9 15 15 H 1.48497 * 109.47345 * 59.99992 * 14 12 10 16 16 H 1.48503 * 109.47247 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46848 * 300.00191 * 14 12 10 18 18 C 1.36442 * 119.69568 * 89.99332 * 3 2 1 19 19 H 1.08995 * 109.47240 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47518 * 300.00783 * 1 2 3 21 21 H 1.09005 * 109.46877 * 60.00357 * 1 2 3 22 22 H 1.09001 * 109.47681 * 239.99941 * 2 1 3 23 23 H 1.09005 * 109.46877 * 119.99643 * 2 1 3 24 24 H 1.08000 * 119.69025 * 0.02562 * 4 3 2 25 25 H 0.96998 * 119.99585 * 174.32539 * 8 7 5 26 26 H 0.96993 * 120.00624 * 354.32076 * 8 7 5 27 27 H 0.96996 * 120.00359 * 174.98051 * 13 12 10 28 28 H 1.07996 * 120.01609 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0695 -1.2066 5 6 2.7183 3.3742 -1.2287 6 17 2.9934 4.1720 -2.7459 7 6 2.9612 4.0452 -0.0375 8 7 3.4238 5.3538 -0.0527 9 6 2.7272 3.3850 1.1919 10 6 2.9629 4.0503 2.4132 11 1 2.8673 5.1245 2.4701 12 6 3.3203 3.3185 3.5509 13 7 3.6756 2.0639 3.4372 14 14 3.2906 4.1320 5.2322 15 1 1.9150 4.6064 5.5284 16 1 3.7092 3.1501 6.2647 17 1 4.2248 5.2864 5.2400 18 6 2.2576 2.0581 1.1852 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8901 24 1 2.0788 1.5510 -2.1361 25 1 3.5137 5.8460 0.7783 26 1 3.6573 5.7760 -0.8941 27 1 3.9929 1.5773 4.2140 28 1 2.0763 1.5445 2.1178 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715430.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:57 Heat of formation + Delta-G solvation = -24.359610 kcal Electronic energy + Delta-G solvation = -13226.905718 eV Core-core repulsion = 10880.634653 eV Total energy + Delta-G solvation = -2346.271065 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.95369 -37.16462 -36.17441 -35.25282 -32.85028 -31.24790 -28.64899 -27.00642 -23.97472 -23.11688 -21.20034 -18.85357 -17.83431 -17.52330 -16.51141 -15.98979 -15.24328 -14.72043 -14.55453 -14.27239 -14.03878 -13.70919 -13.20638 -13.07546 -12.80264 -12.50432 -12.21998 -12.05112 -11.97555 -11.67754 -11.48575 -11.14118 -10.98104 -10.77665 -9.16556 -8.52698 -8.06440 -6.11741 0.93759 1.17109 1.42145 1.51627 1.53154 1.60602 2.25754 2.79959 3.50652 3.69077 4.29209 4.37070 4.64116 4.71841 4.96111 5.00318 5.08561 5.15115 5.30677 5.36182 5.49544 5.57372 5.67567 5.96817 6.25623 6.28188 6.60985 6.89237 6.97022 7.17587 7.39336 8.47496 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.023393 B = 0.010947 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.664285 B = 2557.146200 C = 3581.484677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.109 4.109 4 C -0.181 4.181 5 C -0.097 4.097 6 Cl -0.098 7.098 7 C 0.119 3.881 8 N -0.869 5.869 9 C 0.037 3.963 10 C -0.489 4.489 11 H 0.078 0.922 12 C 0.033 3.967 13 N -0.837 5.837 14 Si 0.979 3.021 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.261 1.261 18 C -0.147 4.147 19 H 0.073 0.927 20 H 0.039 0.961 21 H 0.053 0.947 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.117 0.883 25 H 0.397 0.603 26 H 0.392 0.608 27 H 0.283 0.717 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 0.420 -3.398 4.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C -0.111 4.111 4 C -0.201 4.201 5 C -0.129 4.129 6 Cl -0.070 7.070 7 C 0.015 3.985 8 N -0.412 5.412 9 C 0.032 3.968 10 C -0.520 4.520 11 H 0.096 0.904 12 C -0.180 4.180 13 N -0.464 5.464 14 Si 0.801 3.199 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.186 1.186 18 C -0.168 4.168 19 H 0.092 0.908 20 H 0.058 0.942 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.135 0.865 25 H 0.226 0.774 26 H 0.221 0.779 27 H 0.093 0.907 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.279 0.224 -3.381 4.083 hybrid contribution 0.427 0.718 0.625 1.044 sum -1.851 0.942 -2.756 3.451 Atomic orbital electron populations 1.21661 0.94378 1.01830 1.01306 1.20365 0.96521 0.92176 1.01613 1.19339 1.02642 0.96799 0.92283 1.20183 1.09415 0.93240 0.97287 1.20180 1.13887 0.95382 0.83454 1.98217 1.95789 1.80673 1.32339 1.17879 1.01002 0.87786 0.91856 1.41837 1.76804 1.11705 1.10840 1.17502 0.94942 0.93440 0.90894 1.19355 1.44135 0.94950 0.93592 0.90440 1.26571 0.92336 0.95009 1.04050 1.69866 1.32705 1.10713 1.33139 0.85286 0.79540 0.78666 0.76369 1.18844 1.19926 1.18582 1.20754 1.03340 0.96087 0.96631 0.90845 0.94181 0.92782 0.90934 0.92663 0.86475 0.77380 0.77919 0.90687 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.89 71.98 0.71 -3.46 15 2 C -0.07 -2.51 6.04 29.85 0.18 -2.33 15 3 C -0.11 -4.87 5.10 -20.12 -0.10 -4.97 15 4 C -0.18 -7.83 9.46 22.43 0.21 -7.62 15 5 C -0.10 -4.29 6.33 22.42 0.14 -4.14 15 6 Cl -0.10 -3.58 27.61 -2.72 -0.08 -3.65 15 7 C 0.12 5.62 6.79 38.99 0.26 5.88 15 8 N -0.87 -34.87 8.92 -50.32 -0.45 -35.32 15 9 C 0.04 1.95 5.56 -21.17 -0.12 1.83 15 10 C -0.49 -25.17 8.48 23.37 0.20 -24.98 15 11 H 0.08 3.74 6.73 -2.91 -0.02 3.73 15 12 C 0.03 1.64 5.22 85.24 0.44 2.08 15 13 N -0.84 -43.39 10.93 21.83 0.24 -43.15 15 14 Si 0.98 37.88 29.58 68.60 2.03 39.91 15 15 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 16 H -0.27 -10.28 7.11 99.48 0.71 -9.57 15 17 H -0.26 -9.73 7.11 99.48 0.71 -9.03 15 18 C -0.15 -7.53 8.22 22.47 0.18 -7.34 15 19 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 20 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15 21 H 0.05 1.62 8.14 -2.38 -0.02 1.60 15 22 H 0.07 2.33 8.08 -2.39 -0.02 2.31 15 23 H 0.05 2.05 8.07 -2.38 -0.02 2.03 15 24 H 0.12 4.51 8.06 -2.91 -0.02 4.48 15 25 H 0.40 15.35 7.10 -92.71 -0.66 14.69 15 26 H 0.39 13.83 7.52 -92.71 -0.70 13.13 15 27 H 0.28 13.49 8.30 -92.71 -0.77 12.73 15 28 H 0.10 5.63 6.27 -2.91 -0.02 5.61 15 Total: -1.00 -55.46 254.00 3.70 -51.76 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.16 Total: 35.50 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 2.12 Total: -45.04 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -0.21 Total: -78.47 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 17 Polarization: -3.58 SS G_CDS: -0.08 Total: -3.65 kcal Total: -55.46 3.70 -51.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715430.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.398 kcal (2) G-P(sol) polarization free energy of solvation -55.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds