Wall clock time and date at job start Mon Mar 30 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46893 * 2 1 4 4 C 1.38467 * 119.77630 * 264.72362 * 3 2 1 5 5 C 1.37810 * 120.30311 * 179.76358 * 4 3 2 6 6 Cl 1.73606 * 120.07149 * 180.25499 * 5 4 3 7 7 C 1.40925 * 119.85936 * 0.49336 * 5 4 3 8 8 C 1.41339 * 120.21920 * 179.73976 * 7 5 4 9 9 H 1.07995 * 120.00582 * 220.74906 * 8 7 5 10 10 C 1.39927 * 119.99862 * 40.74992 * 8 7 5 11 11 N 1.30842 * 120.00386 * 212.29002 * 10 8 7 12 12 Si 1.86807 * 119.99958 * 32.28887 * 10 8 7 13 13 H 1.48500 * 109.47025 * 95.62156 * 12 10 8 14 14 H 1.48496 * 109.47084 * 215.62010 * 12 10 8 15 15 H 1.48500 * 109.46928 * 335.62019 * 12 10 8 16 16 C 1.40589 * 119.56267 * 359.76466 * 7 5 4 17 17 C 1.38258 * 119.68766 * 0.02562 * 16 7 5 18 18 N 1.39728 * 119.92740 * 179.97438 * 17 16 7 19 19 H 1.09002 * 109.47478 * 59.99563 * 1 2 3 20 20 H 1.09001 * 109.47226 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46732 * 299.99663 * 1 2 3 22 22 H 1.08999 * 109.47303 * 119.99932 * 2 1 3 23 23 H 1.09002 * 109.47078 * 240.00026 * 2 1 3 24 24 H 1.07994 * 119.84259 * 0.02562 * 4 3 2 25 25 H 0.96997 * 120.00502 * 179.97438 * 11 10 8 26 26 H 1.07996 * 120.14968 * 179.97438 * 16 7 5 27 27 H 0.96995 * 120.00576 * 179.97438 * 18 17 16 28 28 H 0.97007 * 120.00072 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3657 2.0323 -1.1968 5 6 2.8214 3.3328 -1.2098 6 17 3.2314 4.0958 -2.7144 7 6 2.9588 4.0404 0.0012 8 6 3.4307 5.3726 -0.0029 9 1 4.1264 5.7014 0.7548 10 6 2.9966 6.2656 -0.9888 11 7 3.7974 7.2077 -1.4168 12 14 1.2735 6.1127 -1.6941 13 1 0.3604 7.0369 -0.9748 14 1 1.2964 6.4631 -3.1370 15 1 0.7941 4.7167 -1.5313 16 6 2.6237 3.4121 1.2134 17 6 2.1641 2.1082 1.2047 18 7 1.8302 1.4787 2.4067 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 2.2640 1.4890 -2.1245 25 1 3.4965 7.8265 -2.1004 26 1 2.7257 3.9453 2.1470 27 1 1.5072 0.5641 2.4019 28 1 1.9213 1.9565 3.2461 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715453.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:01 Heat of formation + Delta-G solvation = -2.226849 kcal Electronic energy + Delta-G solvation = -13400.413849 eV Core-core repulsion = 11055.102533 eV Total energy + Delta-G solvation = -2345.311316 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.42465 -35.51198 -34.10734 -32.94067 -32.63031 -29.43174 -27.40345 -25.26018 -22.24973 -21.20244 -19.85668 -17.61666 -16.36948 -15.50894 -14.91250 -14.54530 -13.71139 -13.26627 -13.13993 -12.70061 -12.57470 -12.38109 -11.88873 -11.67612 -11.11868 -10.97827 -10.76081 -10.49338 -10.27099 -10.01422 -9.78592 -9.30169 -8.98989 -8.67823 -7.52372 -6.88916 -6.46132 -4.39529 2.61880 2.76722 3.25167 3.27116 3.41711 3.75084 4.15695 4.50551 4.67160 5.28374 5.51052 5.57244 5.90163 6.00028 6.19178 6.27719 6.34092 6.59908 6.73900 6.77569 6.98217 7.23265 7.42026 7.53475 7.66635 7.88150 8.33524 8.43568 8.53252 8.69724 8.86802 10.10533 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.034828 B = 0.011137 C = 0.010083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.752484 B = 2513.638285 C = 2776.412142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C -0.264 4.264 4 C -0.034 4.034 5 C -0.161 4.161 6 Cl -0.103 7.103 7 C 0.133 3.867 8 C -0.474 4.474 9 H 0.093 0.907 10 C 0.118 3.882 11 N -0.785 5.785 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.279 1.279 15 H -0.236 1.236 16 C -0.274 4.274 17 C 0.244 3.756 18 N -0.890 5.890 19 H 0.052 0.948 20 H 0.041 0.959 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.283 0.717 26 H 0.104 0.896 27 H 0.386 0.614 28 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 -8.343 1.853 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.269 4.269 4 C -0.053 4.053 5 C -0.189 4.189 6 Cl -0.075 7.075 7 C 0.129 3.871 8 C -0.501 4.501 9 H 0.111 0.889 10 C -0.106 4.106 11 N -0.407 5.407 12 Si 0.709 3.291 13 H -0.211 1.211 14 H -0.205 1.205 15 H -0.159 1.159 16 C -0.298 4.298 17 C 0.142 3.858 18 N -0.430 5.430 19 H 0.071 0.929 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.119 0.881 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.214 0.786 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.654 -8.021 1.511 9.395 hybrid contribution -0.701 0.111 -0.224 0.744 sum -5.355 -7.909 1.287 9.638 Atomic orbital electron populations 1.21815 0.96723 0.99839 1.01980 1.19989 0.94506 0.94029 1.00465 1.18494 1.20037 0.96899 0.91436 1.20130 0.96378 0.92628 0.96189 1.20764 1.18343 0.93945 0.85886 1.98171 1.92963 1.81955 1.34418 1.17161 0.87737 0.93451 0.88777 1.19162 1.25213 0.94013 1.11699 0.88931 1.25988 0.98940 0.93473 0.92158 1.69837 1.35349 1.14208 1.21283 0.86524 0.82801 0.81653 0.78088 1.21114 1.20455 1.15892 1.20430 1.17004 0.94585 0.97811 1.17408 0.92107 0.91253 0.85051 1.42489 1.77774 1.16799 1.05980 0.92913 0.93944 0.93073 0.93204 0.92638 0.88082 0.90686 0.87790 0.78581 0.78510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.89 37.16 0.37 -1.70 15 2 C -0.05 -0.82 5.48 -27.88 -0.15 -0.97 15 3 C -0.26 -5.25 5.17 -104.13 -0.54 -5.79 15 4 C -0.03 -0.73 9.42 -39.65 -0.37 -1.11 15 5 C -0.16 -3.94 4.66 -38.72 -0.18 -4.12 15 6 Cl -0.10 -2.47 23.19 -51.86 -1.20 -3.68 15 7 C 0.13 3.39 4.66 -106.81 -0.50 2.89 15 8 C -0.47 -12.91 9.16 -37.77 -0.35 -13.25 15 9 H 0.09 2.63 8.06 -52.49 -0.42 2.21 15 10 C 0.12 3.13 3.90 -17.34 -0.07 3.06 15 11 N -0.78 -21.07 13.93 55.55 0.77 -20.29 15 12 Si 0.88 21.39 24.69 -169.99 -4.20 17.20 15 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 15 H -0.24 -5.86 6.04 56.52 0.34 -5.52 15 16 C -0.27 -6.29 9.63 -38.69 -0.37 -6.67 15 17 C 0.24 4.92 6.72 -83.85 -0.56 4.36 15 18 N -0.89 -13.76 8.99 32.38 0.29 -13.47 15 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.04 0.50 8.14 -51.93 -0.42 0.07 15 21 H 0.05 0.73 8.14 -51.92 -0.42 0.31 15 22 H 0.05 0.71 6.79 -51.93 -0.35 0.35 15 23 H 0.05 0.83 8.04 -51.93 -0.42 0.41 15 24 H 0.10 1.99 8.06 -52.49 -0.42 1.57 15 25 H 0.28 6.97 8.30 -40.82 -0.34 6.63 15 26 H 0.10 2.27 8.06 -52.49 -0.42 1.85 15 27 H 0.39 5.14 6.91 -40.82 -0.28 4.86 15 28 H 0.39 5.29 8.84 -40.82 -0.36 4.93 15 LS Contribution 247.22 15.07 3.73 3.73 Total: -1.00 -27.76 247.22 -6.48 -34.24 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.14 Total: 5.57 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -2.73 Total: -23.30 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 1.06 Total: -33.76 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.20 Total: 17.20 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -1.20 Total: -3.68 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.76 -6.48 -34.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715453.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.016 kcal (2) G-P(sol) polarization free energy of solvation -27.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds