Wall clock time and date at job start Mon Mar 30 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46893 * 2 1 4 4 C 1.38467 * 119.77630 * 264.72362 * 3 2 1 5 5 C 1.37810 * 120.30311 * 179.76358 * 4 3 2 6 6 Cl 1.73606 * 120.07149 * 180.25499 * 5 4 3 7 7 C 1.40925 * 119.85936 * 0.49336 * 5 4 3 8 8 C 1.41339 * 120.21920 * 179.73976 * 7 5 4 9 9 H 1.07995 * 120.00582 * 220.74906 * 8 7 5 10 10 C 1.39927 * 119.99862 * 40.74992 * 8 7 5 11 11 N 1.30842 * 120.00386 * 212.29002 * 10 8 7 12 12 Si 1.86807 * 119.99958 * 32.28887 * 10 8 7 13 13 H 1.48500 * 109.47025 * 95.62156 * 12 10 8 14 14 H 1.48496 * 109.47084 * 215.62010 * 12 10 8 15 15 H 1.48500 * 109.46928 * 335.62019 * 12 10 8 16 16 C 1.40589 * 119.56267 * 359.76466 * 7 5 4 17 17 C 1.38258 * 119.68766 * 0.02562 * 16 7 5 18 18 N 1.39728 * 119.92740 * 179.97438 * 17 16 7 19 19 H 1.09002 * 109.47478 * 59.99563 * 1 2 3 20 20 H 1.09001 * 109.47226 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46732 * 299.99663 * 1 2 3 22 22 H 1.08999 * 109.47303 * 119.99932 * 2 1 3 23 23 H 1.09002 * 109.47078 * 240.00026 * 2 1 3 24 24 H 1.07994 * 119.84259 * 0.02562 * 4 3 2 25 25 H 0.96997 * 120.00502 * 179.97438 * 11 10 8 26 26 H 1.07996 * 120.14968 * 179.97438 * 16 7 5 27 27 H 0.96995 * 120.00576 * 179.97438 * 18 17 16 28 28 H 0.97007 * 120.00072 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3657 2.0323 -1.1968 5 6 2.8214 3.3328 -1.2098 6 17 3.2314 4.0958 -2.7144 7 6 2.9588 4.0404 0.0012 8 6 3.4307 5.3726 -0.0029 9 1 4.1264 5.7014 0.7548 10 6 2.9966 6.2656 -0.9888 11 7 3.7974 7.2077 -1.4168 12 14 1.2735 6.1127 -1.6941 13 1 0.3604 7.0369 -0.9748 14 1 1.2964 6.4631 -3.1370 15 1 0.7941 4.7167 -1.5313 16 6 2.6237 3.4121 1.2134 17 6 2.1641 2.1082 1.2047 18 7 1.8302 1.4787 2.4067 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 2.2640 1.4890 -2.1245 25 1 3.4965 7.8265 -2.1004 26 1 2.7257 3.9453 2.1470 27 1 1.5072 0.5641 2.4019 28 1 1.9213 1.9565 3.2461 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715453.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:01 Heat of formation + Delta-G solvation = -19.739404 kcal Electronic energy + Delta-G solvation = -13401.173250 eV Core-core repulsion = 11055.102533 eV Total energy + Delta-G solvation = -2346.070717 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.11147 -37.28449 -35.91948 -34.52743 -34.23403 -31.08255 -29.08136 -26.92223 -23.76065 -22.92094 -21.49862 -19.48431 -17.88229 -17.27054 -16.55330 -16.28890 -15.30544 -14.80715 -14.68216 -14.41156 -14.35314 -13.99304 -13.43277 -13.42375 -12.82628 -12.50029 -12.38582 -12.13181 -11.88859 -11.64543 -11.49803 -11.13230 -10.76794 -10.51495 -9.32511 -8.84746 -8.06755 -6.38717 0.82472 0.97428 1.31823 1.37126 1.47726 1.92193 2.22250 2.62593 3.28142 3.44540 4.23726 4.26817 4.43845 4.70076 4.88658 4.94361 4.97056 5.14186 5.15520 5.28648 5.45365 5.50496 5.68356 5.87948 5.96583 6.06296 6.38850 6.70911 6.84033 6.96556 7.27078 8.20757 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.034828 B = 0.011137 C = 0.010083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.752484 B = 2513.638285 C = 2776.412142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.247 4.247 4 C -0.042 4.042 5 C -0.183 4.183 6 Cl -0.108 7.108 7 C 0.114 3.886 8 C -0.514 4.514 9 H 0.060 0.940 10 C 0.096 3.904 11 N -0.823 5.823 12 Si 0.921 3.079 13 H -0.276 1.276 14 H -0.271 1.271 15 H -0.244 1.244 16 C -0.287 4.287 17 C 0.249 3.751 18 N -0.868 5.868 19 H 0.040 0.960 20 H 0.073 0.927 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.123 0.877 25 H 0.289 0.711 26 H 0.106 0.894 27 H 0.403 0.597 28 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 -11.380 2.367 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 C -0.251 4.251 4 C -0.062 4.062 5 C -0.212 4.212 6 Cl -0.080 7.080 7 C 0.111 3.889 8 C -0.542 4.542 9 H 0.078 0.922 10 C -0.123 4.123 11 N -0.448 5.448 12 Si 0.745 3.255 13 H -0.203 1.203 14 H -0.197 1.197 15 H -0.168 1.168 16 C -0.312 4.312 17 C 0.143 3.857 18 N -0.410 5.410 19 H 0.059 0.941 20 H 0.092 0.908 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.140 0.860 25 H 0.099 0.901 26 H 0.124 0.876 27 H 0.233 0.767 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.353 -11.086 2.066 12.943 hybrid contribution -0.218 0.742 -0.237 0.809 sum -6.571 -10.344 1.830 12.391 Atomic orbital electron populations 1.21764 0.95177 1.01755 1.01314 1.20123 0.95677 0.90981 1.02337 1.19123 1.16681 0.98851 0.90493 1.20483 0.95910 0.91757 0.98006 1.20991 1.19631 0.95075 0.85482 1.98156 1.93089 1.82269 1.34498 1.17331 0.88295 0.93002 0.90301 1.19062 1.27180 0.95594 1.12363 0.92205 1.26367 1.00629 0.93103 0.92213 1.69853 1.36435 1.15683 1.22812 0.85964 0.80436 0.81054 0.78087 1.20348 1.19664 1.16763 1.20600 1.17272 0.96041 0.97241 1.17455 0.90804 0.90432 0.86959 1.42374 1.76186 1.17439 1.04959 0.94112 0.90824 0.93293 0.90918 0.91340 0.85959 0.90088 0.87584 0.76658 0.77093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.89 71.98 0.71 -2.61 15 2 C -0.05 -1.40 5.48 29.85 0.16 -1.24 15 3 C -0.25 -8.94 5.17 -19.55 -0.10 -9.04 15 4 C -0.04 -1.74 9.42 22.22 0.21 -1.53 15 5 C -0.18 -8.88 4.66 22.83 0.11 -8.77 15 6 Cl -0.11 -5.19 23.19 -2.72 -0.06 -5.26 15 7 C 0.11 5.91 4.66 -21.29 -0.10 5.81 15 8 C -0.51 -29.22 9.16 23.44 0.21 -29.01 15 9 H 0.06 3.65 8.06 -2.91 -0.02 3.63 15 10 C 0.10 5.28 3.90 85.25 0.33 5.61 15 11 N -0.82 -45.95 13.93 21.82 0.30 -45.64 15 12 Si 0.92 44.37 24.69 68.60 1.69 46.07 15 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 14 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 15 H -0.24 -11.98 6.04 99.48 0.60 -11.38 15 16 C -0.29 -12.99 9.63 22.85 0.22 -12.77 15 17 C 0.25 9.30 6.72 38.15 0.26 9.56 15 18 N -0.87 -23.25 8.99 -51.48 -0.46 -23.71 15 19 H 0.04 1.05 8.14 -2.39 -0.02 1.03 15 20 H 0.07 1.30 8.14 -2.39 -0.02 1.28 15 21 H 0.05 1.16 8.14 -2.38 -0.02 1.14 15 22 H 0.07 1.61 6.79 -2.39 -0.02 1.60 15 23 H 0.07 1.68 8.04 -2.39 -0.02 1.66 15 24 H 0.12 4.46 8.06 -2.91 -0.02 4.44 15 25 H 0.29 14.72 8.30 -92.71 -0.77 13.95 15 26 H 0.11 4.63 8.06 -2.91 -0.02 4.61 15 27 H 0.40 8.58 6.91 -92.71 -0.64 7.94 15 28 H 0.40 9.40 8.84 -92.70 -0.82 8.58 15 Total: -1.00 -61.09 247.22 3.11 -57.98 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -0.38 Total: 14.55 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 2.02 Total: -43.99 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -0.16 Total: -69.35 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.69 Total: 46.07 kcal Atomic # 17 Polarization: -5.19 SS G_CDS: -0.06 Total: -5.26 kcal Total: -61.09 3.11 -57.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715453.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.246 kcal (2) G-P(sol) polarization free energy of solvation -61.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds