Wall clock time and date at job start Mon Mar 30 2020 02:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47378 * 2 1 4 4 C 1.38467 * 119.84258 * 264.97245 * 3 2 1 5 5 C 1.39337 * 120.44213 * 180.02562 * 4 3 2 6 6 N 1.39730 * 119.92989 * 179.97438 * 5 4 3 7 7 C 1.38251 * 120.13629 * 359.97438 * 5 4 3 8 8 C 1.40592 * 119.69374 * 0.02562 * 7 5 4 9 9 C 1.41340 * 120.21904 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99935 * 154.14027 * 9 8 7 11 11 C 1.39925 * 119.99965 * 334.13498 * 9 8 7 12 12 N 1.30843 * 119.99934 * 343.55826 * 11 9 8 13 13 Si 1.86797 * 120.00121 * 163.55841 * 11 9 8 14 14 H 1.48504 * 109.47233 * 94.96484 * 13 11 9 15 15 H 1.48504 * 109.47407 * 214.96287 * 13 11 9 16 16 H 1.48495 * 109.47212 * 334.96603 * 13 11 9 17 17 C 1.37813 * 119.85091 * 84.99763 * 3 2 1 18 18 Cl 1.73606 * 120.06875 * 359.70373 * 17 3 2 19 19 H 1.09003 * 109.47156 * 60.00243 * 1 2 3 20 20 H 1.08997 * 109.47704 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47192 * 300.00379 * 1 2 3 22 22 H 1.08998 * 109.47044 * 239.99115 * 2 1 3 23 23 H 1.09010 * 109.46818 * 119.99914 * 2 1 3 24 24 H 1.08002 * 119.77781 * 0.03116 * 4 3 2 25 25 H 0.96995 * 120.00210 * 0.02562 * 6 5 4 26 26 H 0.97002 * 119.99592 * 180.02562 * 6 5 4 27 27 H 1.08005 * 120.15809 * 179.97438 * 7 5 4 28 28 H 0.97002 * 120.00135 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3613 2.0353 -1.1964 5 6 2.8275 3.3482 -1.2109 6 7 3.1568 3.9578 -2.4244 7 6 2.9649 4.0491 -0.0272 8 6 2.6325 3.4307 1.1909 9 6 2.7682 4.1371 2.4076 10 1 2.1596 3.8689 3.2585 11 6 3.6912 5.1838 2.5097 12 7 4.6410 5.3077 1.6185 13 14 3.5672 6.4043 3.9184 14 1 4.4631 5.9777 5.0233 15 1 3.9737 7.7514 3.4436 16 1 2.1663 6.4541 4.4084 17 6 2.1628 2.1022 1.1907 18 17 1.7419 1.3281 2.6866 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5140 -0.8899 23 1 1.8933 -0.5139 0.8901 24 1 2.2557 1.4933 -2.1246 25 1 3.0605 3.4671 -3.2555 26 1 3.4818 4.8717 -2.4355 27 1 3.3266 5.0667 -0.0379 28 1 5.2807 6.0336 1.6890 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715456.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:51 Heat of formation + Delta-G solvation = -10.916055 kcal Electronic energy + Delta-G solvation = -13246.114651 eV Core-core repulsion = 10900.426543 eV Total energy + Delta-G solvation = -2345.688108 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.03963 -35.08603 -34.23603 -33.80670 -31.56780 -28.82796 -26.94093 -25.27393 -22.96339 -20.63084 -19.73998 -17.12043 -15.90771 -15.33037 -14.84270 -14.65352 -13.88660 -13.30157 -12.79701 -12.56887 -12.33791 -11.70584 -11.31232 -11.26383 -11.12758 -10.83056 -10.79214 -10.54727 -10.26137 -10.00504 -9.93490 -9.26373 -9.04329 -8.65440 -7.35700 -6.79767 -6.21656 -4.38318 2.79522 2.96729 3.08784 3.14305 3.25701 3.89288 3.95689 4.63323 4.91626 5.58979 5.68831 5.73301 6.07205 6.35176 6.35666 6.47700 6.55663 6.80438 7.00511 7.05198 7.24776 7.28098 7.71725 7.81244 7.83398 8.06002 8.39732 8.68388 8.82174 8.86765 8.94808 10.18674 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.026187 B = 0.011531 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.972982 B = 2427.603559 C = 3350.822720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 C -0.016 4.016 4 C -0.290 4.290 5 C 0.221 3.779 6 N -0.892 5.892 7 C -0.232 4.232 8 C 0.150 3.850 9 C -0.449 4.449 10 H 0.086 0.914 11 C 0.077 3.923 12 N -0.788 5.788 13 Si 0.906 3.094 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.259 1.259 17 C -0.162 4.162 18 Cl -0.123 7.123 19 H 0.049 0.951 20 H 0.044 0.956 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.382 0.618 26 H 0.388 0.612 27 H 0.122 0.878 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 -2.495 -2.983 4.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 C -0.017 4.017 4 C -0.313 4.313 5 C 0.119 3.881 6 N -0.432 5.432 7 C -0.257 4.257 8 C 0.146 3.854 9 C -0.478 4.478 10 H 0.104 0.896 11 C -0.141 4.141 12 N -0.413 5.413 13 Si 0.731 3.269 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.183 1.183 17 C -0.191 4.191 18 Cl -0.095 7.095 19 H 0.069 0.931 20 H 0.063 0.937 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.110 0.890 25 H 0.208 0.792 26 H 0.215 0.785 27 H 0.140 0.860 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.713 -2.461 -2.828 4.628 hybrid contribution 0.229 0.728 0.334 0.833 sum -2.484 -1.733 -2.494 3.924 Atomic orbital electron populations 1.21659 0.95651 1.00234 1.02116 1.20444 0.95590 0.94290 1.01442 1.18849 0.97242 0.94088 0.91524 1.19582 1.20555 0.95550 0.95641 1.17677 0.92883 0.91619 0.85910 1.42337 1.78180 1.17032 1.05651 1.20610 1.14994 1.00858 0.89200 1.17096 0.86948 0.88063 0.93293 1.19632 1.17938 1.12204 0.98032 0.89587 1.25915 0.93704 0.97376 0.97091 1.69865 1.10251 1.27992 1.33228 0.86324 0.79984 0.79432 0.81191 1.19529 1.20144 1.18305 1.20499 1.20421 0.94628 0.83516 1.98172 1.92920 1.81386 1.37042 0.93145 0.93669 0.92319 0.92531 0.91455 0.89005 0.79188 0.78547 0.85996 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.89 37.16 0.37 -1.92 15 2 C -0.08 -1.48 5.56 -27.89 -0.15 -1.63 15 3 C -0.02 -0.35 5.13 -104.70 -0.54 -0.88 15 4 C -0.29 -6.39 9.52 -39.09 -0.37 -6.76 15 5 C 0.22 5.00 6.74 -83.84 -0.57 4.43 15 6 N -0.89 -16.07 9.09 32.38 0.29 -15.78 15 7 C -0.23 -5.91 8.52 -38.69 -0.33 -6.24 15 8 C 0.15 3.99 5.56 -106.82 -0.59 3.39 15 9 C -0.45 -11.90 8.51 -37.77 -0.32 -12.22 15 10 H 0.09 2.25 7.12 -52.49 -0.37 1.88 15 11 C 0.08 1.93 5.16 -17.34 -0.09 1.85 15 12 N -0.79 -20.14 10.96 55.55 0.61 -19.53 15 13 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 15 14 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 15 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 16 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 17 C -0.16 -3.99 6.37 -38.72 -0.25 -4.24 15 18 Cl -0.12 -2.75 25.72 -51.86 -1.33 -4.08 15 19 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.06 1.03 7.85 -51.93 -0.41 0.62 15 22 H 0.06 0.95 8.05 -51.93 -0.42 0.53 15 23 H 0.07 1.24 7.11 -51.92 -0.37 0.88 15 24 H 0.09 1.81 8.06 -52.49 -0.42 1.39 15 25 H 0.38 5.80 8.84 -40.82 -0.36 5.44 15 26 H 0.39 6.48 8.84 -40.82 -0.36 6.12 15 27 H 0.12 3.19 6.21 -52.48 -0.33 2.87 15 28 H 0.28 6.48 8.30 -40.82 -0.34 6.14 15 LS Contribution 254.29 15.07 3.83 3.83 Total: -1.00 -27.36 254.29 -7.49 -34.85 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -3.02 Total: 11.18 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -2.84 Total: -24.23 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.90 Total: -35.31 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 17 Polarization: -2.75 SS G_CDS: -1.33 Total: -4.08 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.36 -7.49 -34.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715456.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.936 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds