Wall clock time and date at job start Mon Mar 30 2020 02:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47378 * 2 1 4 4 C 1.38467 * 119.84258 * 264.97245 * 3 2 1 5 5 C 1.39337 * 120.44213 * 180.02562 * 4 3 2 6 6 N 1.39730 * 119.92989 * 179.97438 * 5 4 3 7 7 C 1.38251 * 120.13629 * 359.97438 * 5 4 3 8 8 C 1.40592 * 119.69374 * 0.02562 * 7 5 4 9 9 C 1.41340 * 120.21904 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99935 * 154.14027 * 9 8 7 11 11 C 1.39925 * 119.99965 * 334.13498 * 9 8 7 12 12 N 1.30843 * 119.99934 * 343.55826 * 11 9 8 13 13 Si 1.86797 * 120.00121 * 163.55841 * 11 9 8 14 14 H 1.48504 * 109.47233 * 94.96484 * 13 11 9 15 15 H 1.48504 * 109.47407 * 214.96287 * 13 11 9 16 16 H 1.48495 * 109.47212 * 334.96603 * 13 11 9 17 17 C 1.37813 * 119.85091 * 84.99763 * 3 2 1 18 18 Cl 1.73606 * 120.06875 * 359.70373 * 17 3 2 19 19 H 1.09003 * 109.47156 * 60.00243 * 1 2 3 20 20 H 1.08997 * 109.47704 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47192 * 300.00379 * 1 2 3 22 22 H 1.08998 * 109.47044 * 239.99115 * 2 1 3 23 23 H 1.09010 * 109.46818 * 119.99914 * 2 1 3 24 24 H 1.08002 * 119.77781 * 0.03116 * 4 3 2 25 25 H 0.96995 * 120.00210 * 0.02562 * 6 5 4 26 26 H 0.97002 * 119.99592 * 180.02562 * 6 5 4 27 27 H 1.08005 * 120.15809 * 179.97438 * 7 5 4 28 28 H 0.97002 * 120.00135 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3613 2.0353 -1.1964 5 6 2.8275 3.3482 -1.2109 6 7 3.1568 3.9578 -2.4244 7 6 2.9649 4.0491 -0.0272 8 6 2.6325 3.4307 1.1909 9 6 2.7682 4.1371 2.4076 10 1 2.1596 3.8689 3.2585 11 6 3.6912 5.1838 2.5097 12 7 4.6410 5.3077 1.6185 13 14 3.5672 6.4043 3.9184 14 1 4.4631 5.9777 5.0233 15 1 3.9737 7.7514 3.4436 16 1 2.1663 6.4541 4.4084 17 6 2.1628 2.1022 1.1907 18 17 1.7419 1.3281 2.6866 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5140 -0.8899 23 1 1.8933 -0.5139 0.8901 24 1 2.2557 1.4933 -2.1246 25 1 3.0605 3.4671 -3.2555 26 1 3.4818 4.8717 -2.4355 27 1 3.3266 5.0667 -0.0379 28 1 5.2807 6.0336 1.6890 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715456.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:51 Heat of formation + Delta-G solvation = -26.555882 kcal Electronic energy + Delta-G solvation = -13246.792845 eV Core-core repulsion = 10900.426543 eV Total energy + Delta-G solvation = -2346.366302 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.79739 -36.83696 -36.01961 -35.44219 -33.26363 -30.51793 -28.64641 -27.13842 -24.50190 -22.42695 -21.42325 -18.94478 -17.57916 -17.10401 -16.62164 -16.28452 -15.44911 -14.82919 -14.53609 -14.15016 -14.03049 -13.39663 -12.94697 -12.92924 -12.79317 -12.50642 -12.39272 -12.22154 -11.88014 -11.74024 -11.55489 -11.09002 -10.80995 -10.35967 -9.20017 -8.64224 -7.93379 -6.32685 1.02964 1.16221 1.39454 1.50940 1.56996 2.08864 2.23500 2.78609 3.38795 3.72883 4.21401 4.34162 4.67008 4.75232 4.91096 5.03784 5.10622 5.19105 5.30142 5.43023 5.47370 5.54174 5.90009 6.03515 6.09330 6.22529 6.53704 6.88853 6.96869 7.10727 7.36516 8.36206 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.026187 B = 0.011531 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.972982 B = 2427.603559 C = 3350.822720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 C -0.017 4.017 4 C -0.293 4.293 5 C 0.223 3.777 6 N -0.875 5.875 7 C -0.262 4.262 8 C 0.121 3.879 9 C -0.484 4.484 10 H 0.077 0.923 11 C 0.039 3.961 12 N -0.817 5.817 13 Si 0.974 3.026 14 H -0.265 1.265 15 H -0.264 1.264 16 H -0.261 1.261 17 C -0.190 4.190 18 Cl -0.113 7.113 19 H 0.053 0.947 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.121 0.879 25 H 0.400 0.600 26 H 0.395 0.605 27 H 0.106 0.894 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 -3.101 -3.820 5.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 C -0.019 4.019 4 C -0.316 4.316 5 C 0.119 3.881 6 N -0.416 5.416 7 C -0.286 4.286 8 C 0.117 3.883 9 C -0.513 4.513 10 H 0.095 0.905 11 C -0.176 4.176 12 N -0.443 5.443 13 Si 0.796 3.204 14 H -0.190 1.190 15 H -0.189 1.189 16 H -0.185 1.185 17 C -0.218 4.218 18 Cl -0.085 7.085 19 H 0.072 0.928 20 H 0.094 0.906 21 H 0.060 0.940 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.139 0.861 25 H 0.229 0.771 26 H 0.223 0.777 27 H 0.124 0.876 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.073 -3.071 -3.711 5.713 hybrid contribution 0.331 0.827 0.478 1.011 sum -2.742 -2.244 -3.233 4.796 Atomic orbital electron populations 1.21613 0.93989 1.02072 1.01434 1.20511 0.96935 0.91784 1.02386 1.19345 0.95790 0.95892 0.90831 1.19965 1.19536 0.95344 0.96766 1.17802 0.91794 0.91977 0.86535 1.42224 1.76952 1.17426 1.04994 1.20556 1.17105 1.00691 0.90297 1.17472 0.87721 0.89242 0.93836 1.19781 1.19206 1.14139 0.98159 0.90465 1.26664 0.92877 0.98481 0.99594 1.69909 1.10796 1.28785 1.34816 0.85308 0.79718 0.77390 0.78031 1.18999 1.18862 1.18479 1.20730 1.21481 0.94659 0.84952 1.98153 1.92851 1.80960 1.36548 0.92813 0.90585 0.94024 0.90283 0.91779 0.86094 0.77138 0.77715 0.87629 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.89 71.98 0.71 -3.32 15 2 C -0.08 -2.71 5.56 29.85 0.17 -2.54 15 3 C -0.02 -0.74 5.13 -19.91 -0.10 -0.84 15 4 C -0.29 -12.30 9.52 22.59 0.22 -12.09 15 5 C 0.22 9.89 6.74 38.15 0.26 10.15 15 6 N -0.87 -29.92 9.09 -51.47 -0.47 -30.39 15 7 C -0.26 -13.57 8.52 22.85 0.19 -13.37 15 8 C 0.12 6.59 5.56 -21.29 -0.12 6.47 15 9 C -0.48 -26.40 8.51 23.44 0.20 -26.20 15 10 H 0.08 4.19 7.12 -2.91 -0.02 4.16 15 11 C 0.04 2.00 5.16 85.25 0.44 2.44 15 12 N -0.82 -42.60 10.96 21.82 0.24 -42.36 15 13 Si 0.97 38.96 29.59 68.60 2.03 40.99 15 14 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 15 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 16 H -0.26 -10.37 7.11 99.48 0.71 -9.67 15 17 C -0.19 -9.38 6.37 22.82 0.15 -9.24 15 18 Cl -0.11 -5.06 25.72 -2.72 -0.07 -5.13 15 19 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 20 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.04 1.38 7.85 -2.39 -0.02 1.36 15 22 H 0.08 2.36 8.05 -2.39 -0.02 2.34 15 23 H 0.06 2.24 7.11 -2.38 -0.02 2.23 15 24 H 0.12 4.31 8.06 -2.91 -0.02 4.29 15 25 H 0.40 10.98 8.84 -92.71 -0.82 10.16 15 26 H 0.40 12.67 8.84 -92.71 -0.82 11.85 15 27 H 0.11 5.71 6.21 -2.91 -0.02 5.69 15 28 H 0.29 13.47 8.30 -92.71 -0.77 12.70 15 Total: -1.00 -59.19 254.29 3.40 -55.79 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.44 Total: 29.65 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 2.11 Total: -48.56 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -0.23 Total: -72.75 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Atomic # 17 Polarization: -5.06 SS G_CDS: -0.07 Total: -5.13 kcal Total: -59.19 3.40 -55.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715456.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.239 kcal (2) G-P(sol) polarization free energy of solvation -59.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds