Wall clock time and date at job start Mon Mar 30 2020 02:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47084 * 2 1 4 4 C 1.37815 * 120.05823 * 90.00378 * 3 2 1 5 5 Cl 1.73596 * 119.84702 * 359.97336 * 4 3 2 6 6 C 1.38590 * 120.30022 * 179.97438 * 4 3 2 7 7 C 1.39319 * 120.41027 * 359.97310 * 6 4 3 8 8 N 1.39680 * 119.94520 * 179.97438 * 7 6 4 9 9 C 1.38285 * 120.11018 * 0.02562 * 7 6 4 10 10 C 1.40612 * 119.70354 * 359.76940 * 9 7 6 11 11 C 1.41404 * 120.20284 * 180.23279 * 10 9 7 12 12 H 1.08003 * 119.99764 * 205.59282 * 11 10 9 13 13 C 1.39924 * 120.00317 * 25.59076 * 11 10 9 14 14 N 1.30835 * 119.99806 * 15.15719 * 13 11 10 15 15 Si 1.86797 * 120.00427 * 195.15841 * 13 11 10 16 16 H 1.48501 * 109.47185 * 89.99490 * 15 13 11 17 17 H 1.48498 * 109.47416 * 209.99951 * 15 13 11 18 18 H 1.48508 * 109.46941 * 330.00125 * 15 13 11 19 19 H 1.08995 * 109.47315 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47450 * 299.99684 * 1 2 3 21 21 H 1.09005 * 109.47273 * 59.99488 * 1 2 3 22 22 H 1.09007 * 109.47295 * 240.00640 * 2 1 3 23 23 H 1.08996 * 109.47419 * 120.00742 * 2 1 3 24 24 H 1.08000 * 119.79887 * 179.97438 * 6 4 3 25 25 H 0.97005 * 119.99748 * 0.02562 * 8 7 6 26 26 H 0.96998 * 120.00463 * 180.02562 * 8 7 6 27 27 H 1.07999 * 120.14893 * 179.97438 * 9 7 6 28 28 H 0.97002 * 119.99725 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0716 1.1928 5 17 1.9717 1.2511 2.6948 6 6 2.7249 3.3780 1.1987 7 6 2.9626 4.0473 0.0001 8 7 3.4282 5.3642 0.0174 9 6 2.7374 3.4106 -1.2065 10 6 2.2724 2.0836 -1.2180 11 6 2.0433 1.4207 -2.4458 12 1 1.3312 0.6103 -2.4973 13 6 2.7390 1.8147 -3.5941 14 7 3.7981 2.5755 -3.4885 15 14 2.1557 1.2544 -5.2779 16 1 1.1928 2.2448 -5.8231 17 1 3.3200 1.1407 -6.1926 18 1 1.4904 -0.0678 -5.1567 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 2.9021 3.8804 2.1381 25 1 3.5860 5.8117 0.8634 26 1 3.5936 5.8311 -0.8166 27 1 2.9211 3.9290 -2.1360 28 1 4.2802 2.8489 -4.2846 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715522.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:58 Heat of formation + Delta-G solvation = -10.461871 kcal Electronic energy + Delta-G solvation = -13329.162760 eV Core-core repulsion = 10983.494346 eV Total energy + Delta-G solvation = -2345.668413 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.10447 -35.51146 -34.54094 -33.37097 -31.20312 -29.39100 -26.77011 -25.39642 -22.22499 -21.21450 -19.38410 -17.41764 -16.11587 -15.31281 -14.81230 -14.24849 -13.86082 -13.05297 -12.80117 -12.68362 -12.26009 -11.85866 -11.49615 -11.23889 -11.09001 -10.91495 -10.80543 -10.48934 -10.21598 -9.98655 -9.58000 -9.36994 -9.32984 -8.70516 -7.34580 -6.81197 -6.25226 -4.42350 2.74861 2.93930 3.06471 3.09562 3.23023 3.30386 3.92024 4.60141 4.94567 5.60079 6.05069 6.08296 6.38898 6.44334 6.72315 6.77498 6.80672 6.90325 7.03226 7.16005 7.27742 7.33092 7.70820 7.73134 7.84202 8.08761 8.38038 8.66266 8.80097 8.88474 8.95179 10.17016 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.011096 C = 0.008196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.901236 B = 2522.741436 C = 3415.319439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 C -0.212 4.212 4 C 0.041 3.959 5 Cl -0.124 7.124 6 C -0.296 4.296 7 C 0.224 3.776 8 N -0.891 5.891 9 C -0.232 4.232 10 C 0.153 3.847 11 C -0.452 4.452 12 H 0.083 0.917 13 C 0.076 3.924 14 N -0.790 5.790 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.261 1.261 19 H 0.037 0.963 20 H 0.045 0.955 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.383 0.617 26 H 0.389 0.611 27 H 0.123 0.877 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 0.602 2.472 3.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.215 4.215 4 C 0.014 3.986 5 Cl -0.096 7.096 6 C -0.319 4.319 7 C 0.122 3.878 8 N -0.431 5.431 9 C -0.257 4.257 10 C 0.149 3.851 11 C -0.481 4.481 12 H 0.101 0.899 13 C -0.142 4.142 14 N -0.415 5.415 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.185 1.185 19 H 0.056 0.944 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.208 0.792 26 H 0.216 0.784 27 H 0.141 0.859 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.748 0.542 2.462 3.068 hybrid contribution 0.051 0.209 -0.600 0.637 sum -1.697 0.752 1.862 2.629 Atomic orbital electron populations 1.21693 0.96976 0.99515 1.01465 1.20101 0.94408 0.94131 1.01012 1.19448 1.14554 0.96537 0.90999 1.20094 1.02476 0.92359 0.83679 1.98238 1.95165 1.80102 1.36105 1.19584 1.21440 0.95374 0.95529 1.17439 0.92842 0.83952 0.93573 1.42289 1.78492 1.13267 1.09078 1.20845 1.14045 0.95924 0.94837 1.17054 0.87063 0.90119 0.90882 1.19585 1.20737 1.15744 0.92067 0.89852 1.25921 0.93373 0.93602 1.01323 1.69851 1.12613 1.27635 1.31416 0.86322 0.79175 0.80250 0.81068 1.19340 1.20380 1.18510 0.94354 0.93614 0.92747 0.91525 0.93164 0.88669 0.79151 0.78401 0.85903 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 37.16 0.37 -2.25 15 2 C -0.06 -1.25 5.05 -27.89 -0.14 -1.39 15 3 C -0.21 -5.08 5.20 -103.84 -0.54 -5.62 15 4 C 0.04 0.93 6.30 -39.61 -0.25 0.68 15 5 Cl -0.12 -2.45 27.26 -51.86 -1.41 -3.86 15 6 C -0.30 -6.67 9.68 -39.05 -0.38 -7.05 15 7 C 0.22 5.08 6.74 -83.86 -0.57 4.52 15 8 N -0.89 -16.14 9.09 32.37 0.29 -15.84 15 9 C -0.23 -5.85 8.52 -38.67 -0.33 -6.17 15 10 C 0.15 3.93 5.57 -106.86 -0.60 3.33 15 11 C -0.45 -11.46 8.14 -37.75 -0.31 -11.77 15 12 H 0.08 2.04 6.60 -52.48 -0.35 1.69 15 13 C 0.08 1.84 5.19 -17.35 -0.09 1.75 15 14 N -0.79 -19.76 10.87 55.55 0.60 -19.16 15 15 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 15 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 18 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.05 1.06 7.91 -51.93 -0.41 0.65 15 22 H 0.07 1.45 6.75 -51.93 -0.35 1.09 15 23 H 0.05 1.01 6.88 -51.93 -0.36 0.65 15 24 H 0.10 1.97 8.06 -52.49 -0.42 1.55 15 25 H 0.38 5.89 8.84 -40.82 -0.36 5.53 15 26 H 0.39 6.49 8.84 -40.82 -0.36 6.13 15 27 H 0.12 3.18 6.14 -52.49 -0.32 2.86 15 28 H 0.28 6.38 8.30 -40.82 -0.34 6.04 15 LS Contribution 252.98 15.07 3.81 3.81 Total: -1.00 -26.39 252.98 -7.47 -33.86 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -2.91 Total: 11.99 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.83 Total: -23.97 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.90 Total: -35.00 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -1.41 Total: -3.86 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.39 -7.47 -33.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715522.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.402 kcal (2) G-P(sol) polarization free energy of solvation -26.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds