Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47246 * 2 1 4 4 C 1.36442 * 119.71357 * 100.02006 * 3 2 1 5 5 C 1.40715 * 119.96343 * 180.02562 * 4 3 2 6 6 C 1.41024 * 120.28906 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99915 * 153.72913 * 6 5 4 8 8 C 1.39912 * 120.00054 * 333.72203 * 6 5 4 9 9 N 1.30897 * 120.00015 * 343.92965 * 8 6 5 10 10 Si 1.86799 * 120.00127 * 163.92172 * 8 6 5 11 11 H 1.48504 * 109.46678 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47065 * 119.99983 * 10 8 6 13 13 H 1.48499 * 109.47248 * 240.00699 * 10 8 6 14 14 C 1.41590 * 119.41993 * 359.97438 * 5 4 3 15 15 N 1.38754 * 120.28779 * 179.97438 * 14 5 4 16 16 C 1.38642 * 119.43287 * 359.70740 * 14 5 4 17 17 C 1.38363 * 120.01120 * 0.56807 * 16 14 5 18 18 Cl 1.73598 * 119.70378 * 179.72475 * 17 16 14 19 19 H 1.09000 * 109.47102 * 60.00169 * 1 2 3 20 20 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47272 * 300.00295 * 1 2 3 22 22 H 1.08993 * 109.47272 * 239.99705 * 2 1 3 23 23 H 1.09000 * 109.47102 * 119.99831 * 2 1 3 24 24 H 1.08001 * 120.01636 * 359.97403 * 4 3 2 25 25 H 0.97004 * 119.99843 * 185.03216 * 9 8 6 26 26 H 0.97006 * 119.99502 * 353.93727 * 15 14 5 27 27 H 0.96994 * 120.00459 * 173.93776 * 15 14 5 28 28 H 1.08000 * 119.99674 * 180.28915 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4522 1.9897 1.1669 5 6 2.9218 3.3161 1.1731 6 6 3.3579 3.9107 2.3752 7 1 4.0818 4.7117 2.3498 8 6 2.8525 3.4631 3.6006 9 7 1.7674 2.7318 3.6332 10 14 3.7265 3.9087 5.1903 11 1 4.9199 4.7375 4.8833 12 1 2.8033 4.6758 6.0645 13 1 4.1510 2.6677 5.8865 14 6 2.9536 4.0483 -0.0384 15 7 3.4127 5.3576 -0.0530 16 6 2.5274 3.4439 -1.2111 17 6 2.0648 2.1400 -1.1892 18 17 1.5263 1.3935 -2.6610 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.4233 1.4224 2.0855 25 1 1.3759 2.4826 4.4851 26 1 3.6304 5.8045 0.7801 27 1 3.5159 5.8261 -0.8960 28 1 2.5521 3.9923 -2.1411 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715750.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -9.260228 kcal Electronic energy + Delta-G solvation = -13280.013025 eV Core-core repulsion = 10934.396719 eV Total energy + Delta-G solvation = -2345.616306 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.16782 -35.47424 -34.20575 -33.61785 -31.22773 -29.46754 -27.07065 -25.01589 -22.34294 -21.34331 -19.49687 -16.99883 -16.13831 -15.80105 -14.87374 -14.07324 -13.78701 -13.09669 -12.81511 -12.51370 -12.28097 -12.02661 -11.46864 -11.39487 -11.18431 -10.93061 -10.70126 -10.59707 -10.15597 -10.12914 -9.63030 -9.41253 -9.21458 -8.84276 -7.35794 -6.77763 -6.36376 -4.22477 2.66054 3.05738 3.06939 3.09972 3.11477 3.49757 3.91334 4.56768 5.19722 5.55642 5.87053 5.88452 6.22006 6.25483 6.56049 6.57917 6.68228 6.87759 6.98589 7.08180 7.17862 7.38915 7.42517 7.73514 7.98438 8.10362 8.39036 8.69906 8.75765 8.98865 9.05296 10.20813 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033015 B = 0.009651 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.902263 B = 2900.499441 C = 3618.693168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C -0.095 4.095 4 C -0.130 4.130 5 C 0.068 3.932 6 C -0.460 4.460 7 H 0.075 0.925 8 C 0.075 3.925 9 N -0.796 5.796 10 Si 0.907 3.093 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.273 1.273 14 C 0.122 3.878 15 N -0.882 5.882 16 C -0.169 4.169 17 C -0.098 4.098 18 Cl -0.131 7.131 19 H 0.053 0.947 20 H 0.040 0.960 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.126 0.874 25 H 0.279 0.721 26 H 0.393 0.607 27 H 0.378 0.622 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -0.563 -2.879 2.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.097 4.097 4 C -0.151 4.151 5 C 0.063 3.937 6 C -0.490 4.490 7 H 0.093 0.907 8 C -0.143 4.143 9 N -0.422 5.422 10 Si 0.732 3.268 11 H -0.186 1.186 12 H -0.201 1.201 13 H -0.198 1.198 14 C 0.021 3.979 15 N -0.423 5.423 16 C -0.194 4.194 17 C -0.125 4.125 18 Cl -0.103 7.103 19 H 0.072 0.928 20 H 0.059 0.941 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.144 0.856 25 H 0.090 0.910 26 H 0.222 0.778 27 H 0.204 0.796 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.219 -0.868 -2.813 2.952 hybrid contribution 0.314 0.588 0.614 0.906 sum 0.533 -0.279 -2.200 2.280 Atomic orbital electron populations 1.21689 0.96004 0.99920 1.02180 1.20326 0.95433 0.94254 1.00863 1.18906 1.03431 0.95236 0.92119 1.20642 1.04115 0.94558 0.95780 1.17326 0.94198 0.91400 0.90776 1.19230 1.22505 1.17211 0.90051 0.90679 1.25827 0.94103 0.93324 1.01000 1.69818 1.15596 1.28680 1.28081 0.86276 0.80330 0.79106 0.81054 1.18619 1.20149 1.19803 1.17730 1.01059 0.85367 0.93786 1.41827 1.78482 1.12736 1.09304 1.19743 1.09024 0.94466 0.96151 1.19752 1.13781 0.94469 0.84523 1.98205 1.90012 1.83418 1.38710 0.92758 0.94059 0.92644 0.92401 0.92429 0.85619 0.90994 0.77814 0.79637 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.84 37.16 0.37 -2.20 15 2 C -0.07 -1.41 5.50 -27.88 -0.15 -1.56 15 3 C -0.09 -2.18 5.10 -104.98 -0.54 -2.72 15 4 C -0.13 -3.27 8.22 -39.29 -0.32 -3.60 15 5 C 0.07 1.73 5.57 -106.63 -0.59 1.13 15 6 C -0.46 -11.50 8.44 -37.90 -0.32 -11.82 15 7 H 0.08 1.78 6.80 -52.49 -0.36 1.42 15 8 C 0.07 1.80 5.16 -17.32 -0.09 1.71 15 9 N -0.80 -19.97 10.96 55.55 0.61 -19.36 15 10 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 15 11 H -0.26 -5.19 7.11 56.52 0.40 -4.78 15 12 H -0.28 -5.47 7.11 56.52 0.40 -5.06 15 13 H -0.27 -5.45 7.11 56.52 0.40 -5.04 15 14 C 0.12 2.84 6.79 -83.30 -0.57 2.28 15 15 N -0.88 -17.03 8.96 32.71 0.29 -16.74 15 16 C -0.17 -3.80 9.66 -39.39 -0.38 -4.18 15 17 C -0.10 -2.19 6.32 -39.25 -0.25 -2.44 15 18 Cl -0.13 -2.56 26.53 -51.86 -1.38 -3.93 15 19 H 0.05 1.00 7.23 -51.93 -0.38 0.62 15 20 H 0.04 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.06 1.08 7.32 -51.93 -0.38 0.70 15 23 H 0.06 1.10 7.97 -51.93 -0.41 0.69 15 24 H 0.13 3.29 6.16 -52.49 -0.32 2.96 15 25 H 0.28 6.42 8.30 -40.82 -0.34 6.08 15 26 H 0.39 7.39 7.14 -40.82 -0.29 7.10 15 27 H 0.38 6.14 8.84 -40.82 -0.36 5.78 15 28 H 0.10 1.98 8.06 -52.49 -0.42 1.55 15 LS Contribution 252.08 15.07 3.80 3.80 Total: -1.00 -26.15 252.08 -7.45 -33.61 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -2.90 Total: 12.88 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.84 Total: -23.38 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.90 Total: -36.10 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -1.38 Total: -3.93 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.15 -7.45 -33.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715750.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.346 kcal (2) G-P(sol) polarization free energy of solvation -26.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds