Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47246 * 2 1 4 4 C 1.36442 * 119.71357 * 100.02006 * 3 2 1 5 5 C 1.40715 * 119.96343 * 180.02562 * 4 3 2 6 6 C 1.41024 * 120.28906 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99915 * 153.72913 * 6 5 4 8 8 C 1.39912 * 120.00054 * 333.72203 * 6 5 4 9 9 N 1.30897 * 120.00015 * 343.92965 * 8 6 5 10 10 Si 1.86799 * 120.00127 * 163.92172 * 8 6 5 11 11 H 1.48504 * 109.46678 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47065 * 119.99983 * 10 8 6 13 13 H 1.48499 * 109.47248 * 240.00699 * 10 8 6 14 14 C 1.41590 * 119.41993 * 359.97438 * 5 4 3 15 15 N 1.38754 * 120.28779 * 179.97438 * 14 5 4 16 16 C 1.38642 * 119.43287 * 359.70740 * 14 5 4 17 17 C 1.38363 * 120.01120 * 0.56807 * 16 14 5 18 18 Cl 1.73598 * 119.70378 * 179.72475 * 17 16 14 19 19 H 1.09000 * 109.47102 * 60.00169 * 1 2 3 20 20 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47272 * 300.00295 * 1 2 3 22 22 H 1.08993 * 109.47272 * 239.99705 * 2 1 3 23 23 H 1.09000 * 109.47102 * 119.99831 * 2 1 3 24 24 H 1.08001 * 120.01636 * 359.97403 * 4 3 2 25 25 H 0.97004 * 119.99843 * 185.03216 * 9 8 6 26 26 H 0.97006 * 119.99502 * 353.93727 * 15 14 5 27 27 H 0.96994 * 120.00459 * 173.93776 * 15 14 5 28 28 H 1.08000 * 119.99674 * 180.28915 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4522 1.9897 1.1669 5 6 2.9218 3.3161 1.1731 6 6 3.3579 3.9107 2.3752 7 1 4.0818 4.7117 2.3498 8 6 2.8525 3.4631 3.6006 9 7 1.7674 2.7318 3.6332 10 14 3.7265 3.9087 5.1903 11 1 4.9199 4.7375 4.8833 12 1 2.8033 4.6758 6.0645 13 1 4.1510 2.6677 5.8865 14 6 2.9536 4.0483 -0.0384 15 7 3.4127 5.3576 -0.0530 16 6 2.5274 3.4439 -1.2111 17 6 2.0648 2.1400 -1.1892 18 17 1.5263 1.3935 -2.6610 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.4233 1.4224 2.0855 25 1 1.3759 2.4826 4.4851 26 1 3.6304 5.8045 0.7801 27 1 3.5159 5.8261 -0.8960 28 1 2.5521 3.9923 -2.1411 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715750.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -23.344317 kcal Electronic energy + Delta-G solvation = -13280.623757 eV Core-core repulsion = 10934.396719 eV Total energy + Delta-G solvation = -2346.227038 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.92863 -37.15190 -35.86322 -35.40834 -32.84151 -31.28771 -28.76861 -26.82057 -23.95347 -23.15332 -21.23423 -18.82174 -17.83586 -17.50717 -16.58393 -15.72986 -15.40108 -14.77062 -14.50833 -14.24146 -13.96237 -13.68020 -13.15809 -13.03782 -12.81412 -12.56677 -12.32979 -12.22661 -11.82639 -11.73613 -11.35649 -11.10371 -10.97905 -10.54021 -9.17858 -8.57237 -8.09751 -6.08177 0.89535 1.25060 1.42531 1.49845 1.55715 1.76608 2.24351 2.76843 3.61403 3.72402 4.29297 4.30743 4.53054 4.70241 4.96336 5.05704 5.08409 5.12625 5.32496 5.40885 5.48520 5.62010 5.63133 5.93413 6.17793 6.28124 6.58188 6.89870 6.96722 7.22890 7.49660 8.43760 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033015 B = 0.009651 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.902263 B = 2900.499441 C = 3618.693168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.070 4.070 3 C -0.106 4.106 4 C -0.151 4.151 5 C 0.034 3.966 6 C -0.485 4.485 7 H 0.080 0.920 8 C 0.034 3.966 9 N -0.829 5.829 10 Si 0.979 3.021 11 H -0.257 1.257 12 H -0.270 1.270 13 H -0.272 1.272 14 C 0.117 3.883 15 N -0.870 5.870 16 C -0.179 4.179 17 C -0.102 4.102 18 Cl -0.103 7.103 19 H 0.051 0.949 20 H 0.071 0.929 21 H 0.036 0.964 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.107 0.893 25 H 0.284 0.716 26 H 0.396 0.604 27 H 0.395 0.605 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -0.437 -3.421 3.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.172 4.172 5 C 0.029 3.971 6 C -0.515 4.515 7 H 0.098 0.902 8 C -0.180 4.180 9 N -0.456 5.456 10 Si 0.801 3.199 11 H -0.181 1.181 12 H -0.195 1.195 13 H -0.197 1.197 14 C 0.014 3.986 15 N -0.412 5.412 16 C -0.203 4.203 17 C -0.129 4.129 18 Cl -0.075 7.075 19 H 0.070 0.930 20 H 0.090 0.910 21 H 0.055 0.945 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.124 0.876 25 H 0.094 0.906 26 H 0.225 0.775 27 H 0.223 0.777 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.391 -0.717 -3.386 3.483 hybrid contribution 0.231 0.526 0.639 0.859 sum 0.622 -0.192 -2.747 2.823 Atomic orbital electron populations 1.21618 0.94722 1.01628 1.01088 1.20356 0.96465 0.92473 1.01418 1.19199 1.03073 0.96829 0.91774 1.20597 1.05784 0.94893 0.95945 1.17684 0.95342 0.92027 0.92027 1.19476 1.23252 1.18045 0.90765 0.90193 1.26625 0.94366 0.93073 1.03973 1.69895 1.16848 1.29787 1.29082 0.85202 0.79168 0.78729 0.76838 1.18070 1.19548 1.19733 1.17892 1.00658 0.86602 0.93449 1.41734 1.77537 1.11511 1.10442 1.20013 1.08831 0.94776 0.96710 1.19950 1.12763 0.94660 0.85576 1.98206 1.89644 1.82947 1.36672 0.93010 0.90972 0.94474 0.91145 0.92475 0.87557 0.90571 0.77494 0.77697 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.84 71.98 0.71 -3.97 15 2 C -0.07 -2.70 5.50 29.85 0.16 -2.53 15 3 C -0.11 -4.89 5.10 -20.10 -0.10 -5.00 15 4 C -0.15 -7.78 8.22 22.46 0.18 -7.60 15 5 C 0.03 1.76 5.57 -21.16 -0.12 1.64 15 6 C -0.49 -24.57 8.44 23.36 0.20 -24.37 15 7 H 0.08 3.81 6.80 -2.91 -0.02 3.79 15 8 C 0.03 1.63 5.16 85.24 0.44 2.07 15 9 N -0.83 -42.55 10.96 21.83 0.24 -42.31 15 10 Si 0.98 37.35 29.59 68.60 2.03 39.38 15 11 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 12 H -0.27 -9.98 7.11 99.48 0.71 -9.28 15 13 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 14 C 0.12 5.40 6.79 38.97 0.26 5.66 15 15 N -0.87 -32.61 8.96 -50.41 -0.45 -33.06 15 16 C -0.18 -7.79 9.66 22.40 0.22 -7.57 15 17 C -0.10 -4.45 6.32 22.49 0.14 -4.31 15 18 Cl -0.10 -3.78 26.53 -2.72 -0.07 -3.85 15 19 H 0.05 1.82 7.23 -2.39 -0.02 1.80 15 20 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 22 H 0.07 2.52 7.32 -2.39 -0.02 2.50 15 23 H 0.06 2.18 7.97 -2.39 -0.02 2.16 15 24 H 0.11 5.79 6.16 -2.91 -0.02 5.78 15 25 H 0.28 13.31 8.30 -92.71 -0.77 12.54 15 26 H 0.40 14.55 7.14 -92.70 -0.66 13.89 15 27 H 0.39 12.08 8.84 -92.71 -0.82 11.26 15 28 H 0.12 4.53 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -55.31 252.08 3.56 -51.76 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.28 Total: 34.06 kcal Atomic # 6 Polarization: -48.07 SS G_CDS: 2.10 Total: -45.97 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -0.21 Total: -75.37 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 17 Polarization: -3.78 SS G_CDS: -0.07 Total: -3.85 kcal Total: -55.31 3.56 -51.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715750.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.412 kcal (2) G-P(sol) polarization free energy of solvation -55.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds