Wall clock time and date at job start Mon Mar 30 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47301 * 2 1 4 4 C 1.36336 * 119.90469 * 265.02871 * 3 2 1 5 5 C 1.40873 * 119.84563 * 179.97438 * 4 3 2 6 6 C 1.41087 * 120.16556 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00403 * 205.14960 * 6 5 4 8 8 C 1.39869 * 120.00394 * 25.15108 * 6 5 4 9 9 N 1.30914 * 119.99621 * 17.50858 * 8 6 5 10 10 Si 1.86794 * 120.00281 * 197.51413 * 8 6 5 11 11 H 1.48499 * 109.47305 * 90.00102 * 10 8 6 12 12 H 1.48499 * 109.47109 * 210.00113 * 10 8 6 13 13 H 1.48501 * 109.47331 * 329.99634 * 10 8 6 14 14 C 1.41040 * 119.66531 * 359.97438 * 5 4 3 15 15 Cl 1.73598 * 120.09400 * 179.97438 * 14 5 4 16 16 C 1.36471 * 119.80621 * 359.97438 * 14 5 4 17 17 C 1.39499 * 120.15122 * 0.02562 * 16 14 5 18 18 N 1.38870 * 119.83241 * 180.27393 * 17 16 14 19 19 H 1.08998 * 109.46674 * 299.99442 * 1 2 3 20 20 H 1.08997 * 109.47588 * 59.99670 * 1 2 3 21 21 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47080 * 240.00267 * 2 1 3 23 23 H 1.08997 * 109.47588 * 120.00330 * 2 1 3 24 24 H 1.08005 * 120.07974 * 359.97438 * 4 3 2 25 25 H 0.96996 * 120.00345 * 184.63929 * 9 8 6 26 26 H 1.07997 * 119.92342 * 180.02562 * 16 14 5 27 27 H 0.96998 * 120.00253 * 179.72066 * 18 17 16 28 28 H 0.97005 * 119.99889 * 359.72809 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3555 2.0275 -1.1774 5 6 2.8245 3.3559 -1.1760 6 6 3.1603 3.9904 -2.3905 7 1 3.8712 4.8035 -2.3965 8 6 2.5727 3.5666 -3.5869 9 7 1.4840 2.8401 -3.5600 10 14 3.3415 4.0369 -5.2231 11 1 4.3225 2.9975 -5.6261 12 1 2.2802 4.1431 -6.2564 13 1 4.0329 5.3442 -5.0877 14 6 2.9556 4.0486 0.0456 15 17 3.5330 5.6856 0.0603 16 6 2.6271 3.4282 1.2159 17 6 2.1635 2.1125 1.2053 18 7 1.8257 1.4895 2.3996 19 1 -0.3632 0.5137 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 2.2522 1.4910 -2.1090 25 1 1.1142 2.4898 -4.3854 26 1 2.7263 3.9570 2.1523 27 1 1.4992 0.5761 2.3947 28 1 1.9162 1.9678 3.2387 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715811.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:08 Heat of formation + Delta-G solvation = -6.072185 kcal Electronic energy + Delta-G solvation = -13284.285606 eV Core-core repulsion = 10938.807544 eV Total energy + Delta-G solvation = -2345.478062 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.34595 -35.29742 -34.36481 -32.78309 -32.26902 -28.55101 -28.11050 -24.41928 -22.86798 -21.12564 -19.55425 -17.08255 -16.15385 -15.91750 -14.94370 -14.03899 -13.50339 -13.19394 -12.90097 -12.67997 -12.37920 -12.02587 -11.55348 -11.34394 -11.07774 -10.84594 -10.69092 -10.59581 -10.34757 -10.02835 -9.53985 -9.32562 -9.26929 -8.65251 -7.34684 -6.77563 -6.47220 -4.11210 2.73358 2.90245 3.14205 3.18893 3.28049 3.73660 4.03193 4.63290 4.97670 5.54718 5.67612 5.70634 6.08401 6.14954 6.32258 6.41733 6.55715 6.77720 6.89520 7.09406 7.23740 7.36574 7.41368 7.65518 8.00152 8.11848 8.47700 8.64905 8.74042 8.91596 8.97573 10.28491 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.012052 C = 0.008226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.882040 B = 2322.659830 C = 3402.953739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C -0.131 4.131 4 C -0.107 4.107 5 C 0.085 3.915 6 C -0.453 4.453 7 H 0.083 0.917 8 C 0.076 3.924 9 N -0.802 5.802 10 Si 0.903 3.097 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.262 1.262 14 C -0.099 4.099 15 Cl -0.121 7.121 16 C -0.155 4.155 17 C 0.110 3.890 18 N -0.893 5.893 19 H 0.049 0.951 20 H 0.059 0.941 21 H 0.042 0.958 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.126 0.874 25 H 0.278 0.722 26 H 0.097 0.903 27 H 0.384 0.616 28 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 -3.530 4.414 5.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.135 4.135 4 C -0.127 4.127 5 C 0.081 3.919 6 C -0.483 4.483 7 H 0.101 0.899 8 C -0.140 4.140 9 N -0.429 5.429 10 Si 0.728 3.272 11 H -0.195 1.195 12 H -0.205 1.205 13 H -0.186 1.186 14 C -0.128 4.128 15 Cl -0.092 7.092 16 C -0.179 4.179 17 C 0.010 3.990 18 N -0.437 5.437 19 H 0.068 0.932 20 H 0.079 0.921 21 H 0.061 0.939 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.144 0.856 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.212 0.788 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.421 -3.390 4.147 5.373 hybrid contribution 0.203 0.233 -0.435 0.533 sum -0.218 -3.157 3.713 4.878 Atomic orbital electron populations 1.21726 0.95987 0.99945 1.02374 1.20224 0.95243 0.94425 1.00637 1.18922 1.06727 0.95405 0.92455 1.20782 1.01891 0.93982 0.96042 1.17297 0.92422 0.91236 0.90958 1.19463 1.21888 1.16272 0.90664 0.89933 1.25801 0.93087 0.94019 1.01072 1.69854 1.15087 1.27977 1.29952 0.86385 0.79589 0.80161 0.81101 1.19462 1.20524 1.18615 1.20238 1.13153 0.84424 0.94966 1.98199 1.88437 1.23702 1.98901 1.19554 1.08309 0.93963 0.96057 1.16909 1.04292 0.92073 0.85728 1.41871 1.79595 1.16828 1.05408 0.93157 0.92145 0.93925 0.92116 0.93121 0.85586 0.91128 0.88515 0.78824 0.79288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.89 37.16 0.37 -1.97 15 2 C -0.07 -1.21 5.47 -27.88 -0.15 -1.36 15 3 C -0.13 -2.87 5.12 -104.80 -0.54 -3.41 15 4 C -0.11 -2.67 8.24 -39.27 -0.32 -2.99 15 5 C 0.08 2.23 5.57 -106.76 -0.59 1.63 15 6 C -0.45 -12.03 8.50 -37.89 -0.32 -12.35 15 7 H 0.08 2.18 7.11 -52.48 -0.37 1.81 15 8 C 0.08 1.92 5.14 -17.33 -0.09 1.83 15 9 N -0.80 -20.53 10.97 55.54 0.61 -19.92 15 10 Si 0.90 19.04 29.60 -169.99 -5.03 14.01 15 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 12 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 13 H -0.26 -5.55 7.11 56.52 0.40 -5.14 15 14 C -0.10 -2.45 6.33 -39.16 -0.25 -2.69 15 15 Cl -0.12 -2.71 27.57 -51.86 -1.43 -4.14 15 16 C -0.16 -3.48 9.59 -39.75 -0.38 -3.86 15 17 C 0.11 2.31 6.75 -83.70 -0.56 1.74 15 18 N -0.89 -14.68 8.95 32.50 0.29 -14.39 15 19 H 0.05 0.81 8.12 -51.93 -0.42 0.39 15 20 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 21 H 0.04 0.58 8.14 -51.93 -0.42 0.15 15 22 H 0.06 1.07 8.04 -51.93 -0.42 0.65 15 23 H 0.05 0.80 6.81 -51.93 -0.35 0.44 15 24 H 0.13 3.24 6.18 -52.48 -0.32 2.92 15 25 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 26 H 0.10 1.97 8.06 -52.49 -0.42 1.55 15 27 H 0.38 5.62 6.88 -40.82 -0.28 5.34 15 28 H 0.38 5.47 8.83 -40.82 -0.36 5.11 15 LS Contribution 253.62 15.07 3.82 3.82 Total: -1.00 -27.04 253.62 -7.52 -34.56 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -2.93 Total: 9.50 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.84 Total: -23.43 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.90 Total: -34.32 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -1.43 Total: -4.14 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.04 -7.52 -34.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715811.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.487 kcal (2) G-P(sol) polarization free energy of solvation -27.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds