Wall clock time and date at job start Mon Mar 30 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47301 * 2 1 4 4 C 1.36336 * 119.90469 * 265.02871 * 3 2 1 5 5 C 1.40873 * 119.84563 * 179.97438 * 4 3 2 6 6 C 1.41087 * 120.16556 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00403 * 205.14960 * 6 5 4 8 8 C 1.39869 * 120.00394 * 25.15108 * 6 5 4 9 9 N 1.30914 * 119.99621 * 17.50858 * 8 6 5 10 10 Si 1.86794 * 120.00281 * 197.51413 * 8 6 5 11 11 H 1.48499 * 109.47305 * 90.00102 * 10 8 6 12 12 H 1.48499 * 109.47109 * 210.00113 * 10 8 6 13 13 H 1.48501 * 109.47331 * 329.99634 * 10 8 6 14 14 C 1.41040 * 119.66531 * 359.97438 * 5 4 3 15 15 Cl 1.73598 * 120.09400 * 179.97438 * 14 5 4 16 16 C 1.36471 * 119.80621 * 359.97438 * 14 5 4 17 17 C 1.39499 * 120.15122 * 0.02562 * 16 14 5 18 18 N 1.38870 * 119.83241 * 180.27393 * 17 16 14 19 19 H 1.08998 * 109.46674 * 299.99442 * 1 2 3 20 20 H 1.08997 * 109.47588 * 59.99670 * 1 2 3 21 21 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47080 * 240.00267 * 2 1 3 23 23 H 1.08997 * 109.47588 * 120.00330 * 2 1 3 24 24 H 1.08005 * 120.07974 * 359.97438 * 4 3 2 25 25 H 0.96996 * 120.00345 * 184.63929 * 9 8 6 26 26 H 1.07997 * 119.92342 * 180.02562 * 16 14 5 27 27 H 0.96998 * 120.00253 * 179.72066 * 18 17 16 28 28 H 0.97005 * 119.99889 * 359.72809 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3555 2.0275 -1.1774 5 6 2.8245 3.3559 -1.1760 6 6 3.1603 3.9904 -2.3905 7 1 3.8712 4.8035 -2.3965 8 6 2.5727 3.5666 -3.5869 9 7 1.4840 2.8401 -3.5600 10 14 3.3415 4.0369 -5.2231 11 1 4.3225 2.9975 -5.6261 12 1 2.2802 4.1431 -6.2564 13 1 4.0329 5.3442 -5.0877 14 6 2.9556 4.0486 0.0456 15 17 3.5330 5.6856 0.0603 16 6 2.6271 3.4282 1.2159 17 6 2.1635 2.1125 1.2053 18 7 1.8257 1.4895 2.3996 19 1 -0.3632 0.5137 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 2.2522 1.4910 -2.1090 25 1 1.1142 2.4898 -4.3854 26 1 2.7263 3.9570 2.1523 27 1 1.4992 0.5761 2.3947 28 1 1.9162 1.9678 3.2387 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715811.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:08 Heat of formation + Delta-G solvation = -21.302611 kcal Electronic energy + Delta-G solvation = -13284.946047 eV Core-core repulsion = 10938.807544 eV Total energy + Delta-G solvation = -2346.138503 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.07310 -37.06810 -36.15885 -34.33251 -33.97761 -30.31319 -29.77734 -26.22828 -24.39411 -22.88876 -21.25657 -18.92948 -17.73047 -17.60813 -16.68662 -15.67551 -15.03616 -14.86613 -14.52539 -14.34967 -14.10145 -13.69329 -13.19243 -12.99154 -12.78199 -12.46092 -12.39105 -12.21268 -11.97902 -11.62058 -11.25176 -11.12914 -11.08489 -10.41683 -9.13691 -8.60740 -8.19756 -6.01193 0.92868 1.12308 1.41675 1.53037 1.57112 1.90649 2.28528 2.79944 3.53875 3.70808 4.22081 4.27352 4.50424 4.67057 4.91742 5.00967 5.04624 5.15923 5.36347 5.42639 5.46467 5.58717 5.63981 5.88909 6.16356 6.30857 6.63510 6.91292 7.02984 7.17408 7.41260 8.45736 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.012052 C = 0.008226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.882040 B = 2322.659830 C = 3402.953739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.125 4.125 5 C 0.048 3.952 6 C -0.488 4.488 7 H 0.071 0.929 8 C 0.038 3.962 9 N -0.832 5.832 10 Si 0.968 3.032 11 H -0.262 1.262 12 H -0.271 1.271 13 H -0.265 1.265 14 C -0.115 4.115 15 Cl -0.112 7.112 16 C -0.169 4.169 17 C 0.127 3.873 18 N -0.874 5.874 19 H 0.053 0.947 20 H 0.032 0.968 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.284 0.716 26 H 0.118 0.882 27 H 0.398 0.602 28 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 -4.608 5.567 7.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 C -0.144 4.144 4 C -0.145 4.145 5 C 0.044 3.956 6 C -0.518 4.518 7 H 0.090 0.910 8 C -0.175 4.175 9 N -0.459 5.459 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.196 1.196 13 H -0.189 1.189 14 C -0.143 4.143 15 Cl -0.083 7.083 16 C -0.193 4.193 17 C 0.025 3.975 18 N -0.419 5.419 19 H 0.072 0.928 20 H 0.051 0.949 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.097 0.903 24 H 0.127 0.873 25 H 0.094 0.906 26 H 0.136 0.864 27 H 0.227 0.773 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.711 -4.488 5.348 7.018 hybrid contribution 0.262 0.525 -0.600 0.839 sum -0.449 -3.963 4.749 6.201 Atomic orbital electron populations 1.21654 0.94690 1.01783 1.01179 1.20283 0.96218 0.91914 1.01915 1.19314 1.05807 0.97453 0.91784 1.20753 1.03224 0.93887 0.96672 1.17619 0.94007 0.92231 0.91718 1.19568 1.23036 1.17204 0.92024 0.91044 1.26494 0.93217 0.93918 1.03850 1.69897 1.15945 1.29097 1.31003 0.85401 0.78839 0.79630 0.77091 1.18710 1.19606 1.18925 1.20496 1.13331 0.85159 0.95352 1.98184 1.88339 1.22912 1.98891 1.19823 1.08496 0.94772 0.96192 1.17033 1.01902 0.91586 0.87005 1.41766 1.78233 1.17404 1.04488 0.92777 0.94869 0.90590 0.92393 0.90288 0.87299 0.90589 0.86435 0.77250 0.77541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.89 71.98 0.71 -3.39 15 2 C -0.07 -2.19 5.47 29.85 0.16 -2.03 15 3 C -0.14 -5.96 5.12 -19.98 -0.10 -6.06 15 4 C -0.13 -6.37 8.24 22.47 0.19 -6.18 15 5 C 0.05 2.59 5.57 -21.25 -0.12 2.47 15 6 C -0.49 -26.80 8.50 23.36 0.20 -26.61 15 7 H 0.07 3.92 7.11 -2.91 -0.02 3.90 15 8 C 0.04 1.97 5.14 85.22 0.44 2.41 15 9 N -0.83 -43.76 10.97 21.82 0.24 -43.52 15 10 Si 0.97 39.82 29.60 68.60 2.03 41.85 15 11 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 12 H -0.27 -10.65 7.11 99.48 0.71 -9.94 15 13 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 14 C -0.12 -5.69 6.33 22.54 0.14 -5.55 15 15 Cl -0.11 -5.03 27.57 -2.72 -0.07 -5.11 15 16 C -0.17 -7.35 9.59 22.16 0.21 -7.14 15 17 C 0.13 5.06 6.75 38.66 0.26 5.32 15 18 N -0.87 -25.42 8.95 -51.09 -0.46 -25.88 15 19 H 0.05 1.57 8.12 -2.39 -0.02 1.55 15 20 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.06 1.96 8.04 -2.39 -0.02 1.94 15 23 H 0.08 2.18 6.81 -2.39 -0.02 2.16 15 24 H 0.11 5.82 6.18 -2.91 -0.02 5.80 15 25 H 0.28 13.60 8.30 -92.71 -0.77 12.83 15 26 H 0.12 4.52 8.06 -2.91 -0.02 4.49 15 27 H 0.40 9.84 6.88 -92.71 -0.64 9.21 15 28 H 0.40 9.72 8.83 -92.70 -0.82 8.90 15 Total: -1.00 -59.07 253.62 3.57 -55.50 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.26 Total: 23.92 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 2.09 Total: -46.75 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -0.22 Total: -69.41 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 17 Polarization: -5.03 SS G_CDS: -0.07 Total: -5.11 kcal Total: -59.07 3.57 -55.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715811.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.194 kcal (2) G-P(sol) polarization free energy of solvation -59.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds