Wall clock time and date at job start Mon Mar 30 2020 02:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46978 * 2 1 4 4 C 1.50702 * 109.46875 * 179.97438 * 3 2 1 5 5 N 1.30459 * 122.10095 * 89.97380 * 4 3 2 6 6 C 1.31862 * 115.69216 * 180.02562 * 5 4 3 7 7 C 1.39908 * 125.55608 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00278 * 0.02562 * 7 6 5 9 9 C 1.40247 * 119.99935 * 179.72216 * 7 6 5 10 10 N 1.30694 * 120.00119 * 0.27850 * 9 7 6 11 11 Si 1.86803 * 119.99956 * 180.27682 * 9 7 6 12 12 H 1.48491 * 109.47369 * 60.00334 * 11 9 7 13 13 H 1.48504 * 109.47032 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00129 * 11 9 7 15 15 S 1.76083 * 108.88758 * 0.22812 * 6 5 4 16 16 C 1.34855 * 122.10640 * 269.99556 * 4 3 2 17 17 C 1.50702 * 125.38154 * 359.97438 * 16 4 3 18 18 C 1.52995 * 109.47106 * 89.99838 * 17 16 4 19 19 H 1.08999 * 109.47633 * 299.99941 * 1 2 3 20 20 H 1.08998 * 109.47171 * 60.00035 * 1 2 3 21 21 H 1.09003 * 109.47102 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47125 * 239.99487 * 2 1 3 23 23 H 1.09006 * 109.46670 * 119.99606 * 2 1 3 24 24 H 1.09004 * 109.47550 * 60.00194 * 3 2 1 25 25 H 1.08997 * 109.47324 * 299.99462 * 3 2 1 26 26 H 0.97005 * 120.00041 * 179.97438 * 10 9 7 27 27 H 1.09001 * 109.46908 * 209.99811 * 17 16 4 28 28 H 1.09000 * 109.46715 * 329.99579 * 17 16 4 29 29 H 1.09001 * 109.47214 * 299.99785 * 18 17 16 30 30 H 1.08997 * 109.47462 * 59.99722 * 18 17 16 31 31 H 1.09001 * 109.46923 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.2407 1.4417 -1.1042 6 6 5.5510 1.4413 -0.9565 7 6 6.4870 1.4400 -1.9964 8 1 6.1531 1.4397 -3.0235 9 6 7.8589 1.4455 -1.7050 10 7 8.2630 1.4463 -0.4622 11 14 9.1085 1.4517 -3.0935 12 1 8.9144 2.6639 -3.9289 13 1 10.4804 1.4564 -2.5248 14 1 8.9244 0.2389 -3.9306 15 16 5.9308 1.4351 0.7629 16 6 4.2632 1.4427 1.1432 17 6 3.6857 1.4435 2.5352 18 6 3.4896 0.0014 3.0069 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 9.2119 1.4498 -0.2607 27 1 4.3687 1.9574 3.2116 28 1 2.7246 1.9578 2.5294 29 1 2.8066 -0.5125 2.3304 30 1 4.4506 -0.5129 3.0126 31 1 3.0714 0.0021 4.0135 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019423326.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:15 Heat of formation + Delta-G solvation = -28.750325 kcal Electronic energy + Delta-G solvation = -13379.199651 eV Core-core repulsion = 11170.614991 eV Total energy + Delta-G solvation = -2208.584659 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.89824 -36.46688 -35.22064 -34.25061 -30.84435 -28.50547 -27.30205 -24.10410 -23.12873 -22.33291 -19.80525 -18.95646 -17.87710 -16.78514 -15.92211 -15.43698 -15.06748 -14.72307 -14.63209 -14.22427 -13.74374 -13.57309 -13.27362 -12.94555 -12.88196 -12.75608 -12.56935 -12.12228 -12.01837 -11.95851 -11.76361 -11.27501 -11.26472 -10.95300 -9.66318 -9.55791 -9.00159 -8.85017 -6.63287 0.69567 1.38108 1.51221 1.54095 1.58791 2.07161 2.22640 2.32898 3.19392 4.00463 4.17668 4.28529 4.36369 4.38371 4.59279 4.67280 4.81060 4.82430 4.97471 5.01505 5.08960 5.12412 5.19370 5.23778 5.28382 5.40835 5.57317 5.64170 5.86512 6.01936 6.43292 6.56160 7.90992 8.04842 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.038109 B = 0.008338 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.563121 B = 3357.340380 C = 3906.094390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.035 4.035 4 C 0.090 3.910 5 N -0.633 5.633 6 C 0.171 3.829 7 C -0.409 4.409 8 H 0.097 0.903 9 C 0.020 3.980 10 N -0.801 5.801 11 Si 1.017 2.983 12 H -0.256 1.256 13 H -0.256 1.256 14 H -0.256 1.256 15 S 0.075 5.925 16 C -0.429 4.429 17 C -0.011 4.011 18 C -0.138 4.138 19 H 0.066 0.934 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.310 0.690 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 -1.573 2.931 5.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C -0.075 4.075 4 C -0.048 4.048 5 N -0.356 5.356 6 C -0.082 4.082 7 C -0.452 4.452 8 H 0.115 0.885 9 C -0.200 4.200 10 N -0.430 5.430 11 Si 0.835 3.165 12 H -0.180 1.180 13 H -0.180 1.180 14 H -0.181 1.181 15 S 0.334 5.666 16 C -0.553 4.553 17 C -0.050 4.050 18 C -0.195 4.195 19 H 0.085 0.915 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.054 0.946 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.164 -1.575 3.210 4.775 hybrid contribution -0.224 0.087 -0.586 0.634 sum -3.388 -1.488 2.624 4.536 Atomic orbital electron populations 1.21714 0.93319 1.02332 1.02329 1.21454 0.97138 0.95311 1.00980 1.20107 0.87987 0.97945 1.01444 1.20185 0.97527 0.99628 0.87466 1.67327 1.03948 1.33979 1.30354 1.24303 0.92105 0.96609 0.95149 1.19293 0.90382 1.41459 0.94056 0.88469 1.27174 1.01008 0.91383 1.00387 1.68866 1.20320 1.32518 1.21247 0.84699 0.75164 0.80404 0.76279 1.18034 1.17998 1.18052 1.83947 1.02149 1.74814 1.05738 1.25115 1.00433 1.29673 1.00075 1.19488 0.98948 0.97305 0.89307 1.21808 1.00761 0.96015 1.00946 0.91460 0.92672 0.91633 0.94621 0.91974 0.90195 0.92729 0.87717 0.93244 0.91169 0.92867 0.94727 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.11 -3.77 5.92 30.59 0.18 -3.59 16 3 C -0.04 -1.38 5.35 29.85 0.16 -1.22 16 4 C 0.09 4.49 5.95 41.99 0.25 4.74 16 5 N -0.63 -36.03 10.68 -183.44 -1.96 -37.98 16 6 C 0.17 9.87 7.14 85.09 0.61 10.47 16 7 C -0.41 -22.33 9.45 23.16 0.22 -22.12 16 8 H 0.10 5.16 7.85 -2.91 -0.02 5.14 16 9 C 0.02 0.98 5.50 85.35 0.47 1.45 16 10 N -0.80 -39.35 10.67 21.88 0.23 -39.11 16 11 Si 1.02 35.73 29.56 68.60 2.03 37.76 16 12 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 13 H -0.26 -8.21 7.11 99.48 0.71 -7.51 16 14 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 15 S 0.07 3.97 20.15 -56.49 -1.14 2.83 16 16 C -0.43 -20.58 5.63 24.91 0.14 -20.44 16 17 C -0.01 -0.41 6.09 29.85 0.18 -0.23 16 18 C -0.14 -4.51 9.89 71.98 0.71 -3.80 16 19 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 20 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 2.11 5.52 -2.38 -0.01 2.10 16 24 H 0.08 2.76 6.61 -2.38 -0.02 2.75 16 25 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.31 13.40 8.29 -92.70 -0.77 12.63 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 2.38 6.66 -2.39 -0.02 2.37 16 29 H 0.05 1.74 5.52 -2.39 -0.01 1.73 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -62.33 268.81 3.91 -58.42 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 1.12 Total: 15.59 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 3.63 Total: -37.51 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -1.72 Total: -77.10 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.14 Total: 2.83 kcal Total: -62.33 3.91 -58.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019423326.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.667 kcal (2) G-P(sol) polarization free energy of solvation -62.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds