Wall clock time and date at job start Mon Mar 30 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46935 * 2 1 4 4 C 1.52999 * 109.46799 * 60.00502 * 3 2 1 5 5 C 1.52996 * 109.47155 * 300.00334 * 3 2 1 6 6 C 1.50697 * 109.46732 * 180.02562 * 3 2 1 7 7 C 1.34854 * 122.10197 * 165.00233 * 6 3 2 8 8 S 1.71043 * 109.23637 * 180.02562 * 7 6 3 9 9 C 1.76089 * 90.38852 * 0.02562 * 8 7 6 10 10 C 1.39909 * 125.55146 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99744 * 179.97438 * 10 9 8 12 12 C 1.40242 * 120.00313 * 359.97359 * 10 9 8 13 13 N 1.30701 * 120.00236 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99991 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47057 * 90.00534 * 14 12 10 16 16 H 1.48501 * 109.47109 * 210.00085 * 14 12 10 17 17 H 1.48499 * 109.47463 * 330.00265 * 14 12 10 18 18 N 1.30462 * 122.10412 * 345.02064 * 6 3 2 19 19 H 1.08994 * 109.47147 * 180.02562 * 1 2 3 20 20 H 1.09008 * 109.46739 * 299.99757 * 1 2 3 21 21 H 1.08999 * 109.47341 * 59.99521 * 1 2 3 22 22 H 1.09005 * 109.46261 * 240.00354 * 2 1 3 23 23 H 1.08999 * 109.47341 * 120.00479 * 2 1 3 24 24 H 1.09005 * 109.46261 * 179.97438 * 4 3 2 25 25 H 1.08998 * 109.47228 * 299.99085 * 4 3 2 26 26 H 1.08993 * 109.47400 * 60.00092 * 4 3 2 27 27 H 1.09008 * 109.47223 * 300.00188 * 5 3 2 28 28 H 1.09000 * 109.47301 * 60.00043 * 5 3 2 29 29 H 1.09003 * 109.47314 * 180.02562 * 5 3 2 30 30 H 1.07996 * 125.38466 * 0.02562 * 7 6 3 31 31 H 0.96992 * 120.00207 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5299 2.1638 -1.2492 6 6 3.5470 1.4425 -0.0006 7 6 4.2636 2.5460 -0.2964 8 16 5.9311 2.1778 -0.1993 9 6 5.5508 0.5168 0.2445 10 6 6.4865 -0.4882 0.5127 11 1 6.1523 -1.4803 0.7783 12 6 7.8584 -0.2074 0.4368 13 7 8.2629 0.9933 0.1159 14 14 9.1077 -1.5490 0.7956 15 1 9.4381 -2.2668 -0.4618 16 1 10.3405 -0.9402 1.3566 17 1 8.5377 -2.5066 1.7771 18 7 4.2404 0.3749 0.2846 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.8932 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 1.8938 3.1912 1.2495 25 1 0.4401 2.1638 1.2493 26 1 1.8935 1.6499 2.1392 27 1 1.8932 1.6499 -2.1393 28 1 0.4399 2.1638 -1.2491 29 1 1.8936 3.1914 -1.2494 30 1 3.8500 3.5098 -0.5539 31 1 9.2118 1.1875 0.0630 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059438737.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:52 Heat of formation + Delta-G solvation = -3.721305 kcal Electronic energy + Delta-G solvation = -13536.448454 eV Core-core repulsion = 11328.949135 eV Total energy + Delta-G solvation = -2207.499320 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.56593 -35.65592 -33.89235 -30.23384 -28.39434 -26.81945 -25.96721 -24.44036 -21.75971 -19.60399 -17.65609 -17.10259 -15.67744 -15.10198 -14.26261 -14.07012 -13.68259 -13.19289 -13.05354 -12.22243 -12.06186 -11.93768 -11.61719 -11.48219 -11.38249 -11.25005 -10.65586 -10.64798 -10.52912 -10.34607 -10.01805 -9.85338 -9.55296 -9.12044 -7.77545 -7.64070 -7.02634 -7.02539 -4.67640 2.58736 2.94961 3.00685 3.07815 3.62549 3.72062 4.13709 4.19385 5.15315 5.39521 5.46514 5.60005 5.83712 5.88410 5.98626 6.16711 6.18081 6.33705 6.37151 6.49363 6.58605 6.61824 6.69399 6.84981 6.87371 7.02698 7.13825 7.42067 7.70437 7.95437 8.37031 8.51680 9.82591 9.91078 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.043718 B = 0.008044 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.317550 B = 3479.813894 C = 3919.964316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.095 4.095 3 C 0.009 3.991 4 C -0.130 4.130 5 C -0.131 4.131 6 C 0.124 3.876 7 C -0.463 4.463 8 S 0.091 5.909 9 C 0.206 3.794 10 C -0.377 4.377 11 H 0.101 0.899 12 C 0.055 3.945 13 N -0.781 5.781 14 Si 0.940 3.060 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.257 1.257 18 N -0.595 5.595 19 H 0.045 0.955 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.125 0.875 31 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 0.108 -0.099 4.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.133 4.133 3 C 0.006 3.994 4 C -0.188 4.188 5 C -0.189 4.189 6 C -0.017 4.017 7 C -0.606 4.606 8 S 0.350 5.650 9 C -0.047 4.047 10 C -0.419 4.419 11 H 0.119 0.881 12 C -0.167 4.167 13 N -0.410 5.410 14 Si 0.763 3.237 15 H -0.190 1.190 16 H -0.198 1.198 17 H -0.181 1.181 18 N -0.317 5.317 19 H 0.064 0.936 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.016 0.363 -0.161 4.036 hybrid contribution -0.330 -0.262 0.060 0.425 sum -4.346 0.101 -0.102 4.348 Atomic orbital electron populations 1.21968 0.97448 1.00628 1.01237 1.21310 0.93212 0.95908 1.02886 1.19010 0.90418 0.95237 0.94685 1.21829 0.99390 1.00010 0.97584 1.21859 0.99390 1.00168 0.97481 1.19496 0.94609 0.88891 0.98689 1.25661 1.01954 1.03127 1.29888 1.84149 1.00534 1.11150 1.69212 1.23942 0.91408 0.94033 0.95310 1.18960 0.88800 0.97343 1.36839 0.88086 1.26162 1.00108 0.97214 0.93227 1.68843 1.18914 1.20378 1.32819 0.85752 0.78245 0.79891 0.79815 1.18995 1.19795 1.18107 1.67239 1.03465 1.28727 1.32253 0.93564 0.92970 0.93061 0.92345 0.91332 0.93140 0.93071 0.92935 0.93075 0.93109 0.92971 0.85680 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.21 37.16 0.34 -1.90 16 2 C -0.10 -1.77 4.41 -26.73 -0.12 -1.89 16 3 C 0.01 0.18 0.67 -155.66 -0.10 0.08 16 4 C -0.13 -2.29 8.07 37.16 0.30 -1.99 16 5 C -0.13 -2.26 7.77 37.16 0.29 -1.98 16 6 C 0.12 3.03 5.39 -84.38 -0.45 2.57 16 7 C -0.46 -11.47 10.12 29.53 0.30 -11.17 16 8 S 0.09 2.38 20.19 -107.50 -2.17 0.21 16 9 C 0.21 5.72 7.14 -16.91 -0.12 5.60 16 10 C -0.38 -9.92 9.45 -38.20 -0.36 -10.28 16 11 H 0.10 2.57 7.85 -52.49 -0.41 2.16 16 12 C 0.06 1.32 5.50 -17.28 -0.10 1.22 16 13 N -0.78 -19.09 10.67 55.56 0.59 -18.50 16 14 Si 0.94 17.74 29.56 -169.99 -5.03 12.71 16 15 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 16 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 18 N -0.60 -16.09 9.63 -9.33 -0.09 -16.18 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 20 H 0.05 0.70 6.43 -51.92 -0.33 0.37 16 21 H 0.05 0.69 6.43 -51.93 -0.33 0.35 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.07 1.39 7.95 -51.93 -0.41 0.97 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.75 6.43 -51.93 -0.33 0.42 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 28 H 0.05 0.73 6.43 -51.93 -0.33 0.40 16 29 H 0.05 0.89 7.07 -51.93 -0.37 0.53 16 30 H 0.13 2.88 7.23 -52.49 -0.38 2.50 16 31 H 0.30 6.49 8.29 -40.82 -0.34 6.15 16 LS Contribution 263.92 15.07 3.98 3.98 Total: -1.00 -27.88 263.92 -6.89 -34.78 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.15 Total: 2.74 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -0.02 Total: -19.74 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.50 Total: -34.68 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.17 Total: 0.21 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.88 -6.89 -34.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059438737.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.055 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds