Wall clock time and date at job start Mon Mar 30 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46935 * 2 1 4 4 C 1.52999 * 109.46799 * 60.00502 * 3 2 1 5 5 C 1.52996 * 109.47155 * 300.00334 * 3 2 1 6 6 C 1.50697 * 109.46732 * 180.02562 * 3 2 1 7 7 C 1.34854 * 122.10197 * 165.00233 * 6 3 2 8 8 S 1.71043 * 109.23637 * 180.02562 * 7 6 3 9 9 C 1.76089 * 90.38852 * 0.02562 * 8 7 6 10 10 C 1.39909 * 125.55146 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99744 * 179.97438 * 10 9 8 12 12 C 1.40242 * 120.00313 * 359.97359 * 10 9 8 13 13 N 1.30701 * 120.00236 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99991 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47057 * 90.00534 * 14 12 10 16 16 H 1.48501 * 109.47109 * 210.00085 * 14 12 10 17 17 H 1.48499 * 109.47463 * 330.00265 * 14 12 10 18 18 N 1.30462 * 122.10412 * 345.02064 * 6 3 2 19 19 H 1.08994 * 109.47147 * 180.02562 * 1 2 3 20 20 H 1.09008 * 109.46739 * 299.99757 * 1 2 3 21 21 H 1.08999 * 109.47341 * 59.99521 * 1 2 3 22 22 H 1.09005 * 109.46261 * 240.00354 * 2 1 3 23 23 H 1.08999 * 109.47341 * 120.00479 * 2 1 3 24 24 H 1.09005 * 109.46261 * 179.97438 * 4 3 2 25 25 H 1.08998 * 109.47228 * 299.99085 * 4 3 2 26 26 H 1.08993 * 109.47400 * 60.00092 * 4 3 2 27 27 H 1.09008 * 109.47223 * 300.00188 * 5 3 2 28 28 H 1.09000 * 109.47301 * 60.00043 * 5 3 2 29 29 H 1.09003 * 109.47314 * 180.02562 * 5 3 2 30 30 H 1.07996 * 125.38466 * 0.02562 * 7 6 3 31 31 H 0.96992 * 120.00207 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5299 2.1638 -1.2492 6 6 3.5470 1.4425 -0.0006 7 6 4.2636 2.5460 -0.2964 8 16 5.9311 2.1778 -0.1993 9 6 5.5508 0.5168 0.2445 10 6 6.4865 -0.4882 0.5127 11 1 6.1523 -1.4803 0.7783 12 6 7.8584 -0.2074 0.4368 13 7 8.2629 0.9933 0.1159 14 14 9.1077 -1.5490 0.7956 15 1 9.4381 -2.2668 -0.4618 16 1 10.3405 -0.9402 1.3566 17 1 8.5377 -2.5066 1.7771 18 7 4.2404 0.3749 0.2846 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.8932 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 1.8938 3.1912 1.2495 25 1 0.4401 2.1638 1.2493 26 1 1.8935 1.6499 2.1392 27 1 1.8932 1.6499 -2.1393 28 1 0.4399 2.1638 -1.2491 29 1 1.8936 3.1914 -1.2494 30 1 3.8500 3.5098 -0.5539 31 1 9.2118 1.1875 0.0630 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059438737.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:52 Heat of formation + Delta-G solvation = -19.612744 kcal Electronic energy + Delta-G solvation = -13537.137559 eV Core-core repulsion = 11328.949135 eV Total energy + Delta-G solvation = -2208.188424 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.32878 -37.36147 -35.76649 -31.79953 -30.15866 -28.31102 -27.77011 -25.99867 -23.50927 -21.29479 -19.64650 -18.81446 -17.52621 -16.85332 -15.93102 -15.56707 -15.21681 -14.76394 -14.64069 -14.09374 -13.68782 -13.59941 -13.01940 -12.93252 -12.87780 -12.69533 -12.33095 -12.22567 -12.04318 -12.01343 -11.49990 -11.32953 -11.25345 -10.92640 -9.79457 -9.67854 -9.03283 -8.87378 -6.68364 0.68948 1.38717 1.50510 1.56997 1.60114 2.07537 2.22786 2.34771 3.20209 3.87410 4.01236 4.16622 4.43735 4.55801 4.64358 4.79245 4.82569 4.90777 4.96482 5.02173 5.05391 5.12588 5.17132 5.22219 5.31334 5.55651 5.62204 5.69017 5.80849 5.97564 6.41881 6.54545 7.89602 8.03814 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.043718 B = 0.008044 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.317550 B = 3479.813894 C = 3919.964316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C 0.002 3.998 4 C -0.123 4.123 5 C -0.124 4.124 6 C 0.116 3.884 7 C -0.478 4.478 8 S 0.066 5.934 9 C 0.173 3.827 10 C -0.403 4.403 11 H 0.100 0.900 12 C 0.019 3.981 13 N -0.799 5.799 14 Si 1.018 2.982 15 H -0.256 1.256 16 H -0.257 1.257 17 H -0.255 1.255 18 N -0.622 5.622 19 H 0.058 0.942 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.034 0.966 23 H 0.041 0.959 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.033 0.967 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.140 0.860 31 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 -0.239 0.016 5.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.001 4.001 4 C -0.181 4.181 5 C -0.182 4.182 6 C -0.024 4.024 7 C -0.620 4.620 8 S 0.324 5.676 9 C -0.079 4.079 10 C -0.446 4.446 11 H 0.118 0.882 12 C -0.201 4.201 13 N -0.427 5.427 14 Si 0.835 3.165 15 H -0.180 1.180 16 H -0.181 1.181 17 H -0.179 1.179 18 N -0.344 5.344 19 H 0.077 0.923 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.601 0.051 -0.056 4.602 hybrid contribution -0.112 -0.152 0.021 0.190 sum -4.713 -0.101 -0.036 4.715 Atomic orbital electron populations 1.21891 0.93601 1.02098 1.02688 1.21220 0.96451 0.94697 1.00459 1.19247 0.87286 0.96591 0.96956 1.21778 1.01643 0.99120 0.95550 1.21808 1.01569 0.99377 0.95416 1.20265 0.97273 0.88006 0.96850 1.25793 1.01110 1.04016 1.31122 1.83954 1.02295 1.11016 1.70351 1.24452 0.92249 0.95026 0.96171 1.19339 0.90279 0.97215 1.37721 0.88207 1.27216 1.01106 0.99791 0.91975 1.68882 1.20350 1.22034 1.31474 0.84638 0.75454 0.76462 0.79905 1.18048 1.18104 1.17874 1.67329 1.03511 1.30042 1.33564 0.92285 0.91501 0.91415 0.94661 0.93971 0.93368 0.89306 0.94737 0.94463 0.89470 0.93048 0.84195 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.21 71.98 0.66 -3.11 16 2 C -0.09 -3.31 4.41 30.60 0.13 -3.17 16 3 C 0.00 0.07 0.67 -52.93 -0.04 0.04 16 4 C -0.12 -4.13 8.07 71.98 0.58 -3.55 16 5 C -0.12 -4.05 7.77 71.98 0.56 -3.49 16 6 C 0.12 5.78 5.39 41.98 0.23 6.00 16 7 C -0.48 -24.12 10.12 67.04 0.68 -23.44 16 8 S 0.07 3.56 20.19 -56.49 -1.14 2.42 16 9 C 0.17 9.92 7.14 85.09 0.61 10.53 16 10 C -0.40 -21.72 9.45 23.16 0.22 -21.50 16 11 H 0.10 5.22 7.85 -2.91 -0.02 5.20 16 12 C 0.02 0.92 5.50 85.35 0.47 1.39 16 13 N -0.80 -39.09 10.67 21.88 0.23 -38.86 16 14 Si 1.02 35.34 29.56 68.60 2.03 37.37 16 15 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 16 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 17 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 18 N -0.62 -34.79 9.63 -183.44 -1.77 -36.56 16 19 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 20 H 0.07 1.55 6.43 -2.38 -0.02 1.53 16 21 H 0.07 1.54 6.43 -2.39 -0.02 1.53 16 22 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.04 1.73 7.95 -2.39 -0.02 1.71 16 24 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.09 2.29 6.43 -2.39 -0.02 2.27 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.09 2.19 6.43 -2.39 -0.02 2.18 16 29 H 0.05 1.67 7.07 -2.39 -0.02 1.65 16 30 H 0.14 6.46 7.23 -2.91 -0.02 6.44 16 31 H 0.31 13.31 8.29 -92.71 -0.77 12.54 16 Total: -1.00 -61.98 263.92 4.57 -57.41 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.11 Total: 18.52 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 4.10 Total: -40.30 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.53 Total: -75.42 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.14 Total: 2.42 kcal Total: -61.98 4.57 -57.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059438737.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.797 kcal (2) G-P(sol) polarization free energy of solvation -61.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds