Wall clock time and date at job start Mon Mar 30 2020 02:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47290 * 2 1 4 4 C 1.53000 * 109.47186 * 119.99957 * 2 1 3 5 5 C 1.53000 * 109.47286 * 65.00273 * 4 2 1 6 6 C 1.50700 * 109.47427 * 179.97438 * 5 4 2 7 7 N 1.28794 * 124.98742 * 89.99506 * 6 5 4 8 8 C 1.33649 * 116.05825 * 179.97438 * 7 6 5 9 9 C 1.41155 * 122.86387 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00162 * 174.01320 * 9 8 7 11 11 C 1.39718 * 120.00311 * 354.01774 * 9 8 7 12 12 N 1.31022 * 119.99468 * 6.16333 * 11 9 8 13 13 Si 1.86795 * 120.00499 * 186.15742 * 11 9 8 14 14 H 1.48499 * 109.46825 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47117 * 119.99934 * 13 11 9 16 16 H 1.48502 * 109.47303 * 240.00280 * 13 11 9 17 17 C 1.37695 * 114.27644 * 0.02562 * 8 7 6 18 18 S 1.71002 * 108.83606 * 359.72776 * 17 8 7 19 19 H 1.08994 * 109.46966 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47067 * 299.99888 * 1 2 3 21 21 H 1.08996 * 109.47140 * 59.99779 * 1 2 3 22 22 H 1.09002 * 109.47067 * 240.00112 * 2 1 3 23 23 H 1.08994 * 109.47261 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47210 * 300.00178 * 3 2 1 25 25 H 1.09002 * 109.46974 * 60.00055 * 3 2 1 26 26 H 1.09000 * 109.46923 * 184.99913 * 4 2 1 27 27 H 1.08998 * 109.47365 * 304.99630 * 4 2 1 28 28 H 1.09000 * 109.46391 * 299.99967 * 5 4 2 29 29 H 1.09002 * 109.47203 * 59.99858 * 5 4 2 30 30 H 0.97006 * 120.00044 * 180.02562 * 12 11 9 31 31 H 1.07995 * 125.58836 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1880 6 6 2.1382 -2.9060 2.4181 7 7 1.4832 -3.0275 3.5204 8 6 2.1008 -3.6951 4.4998 9 6 1.5159 -3.9121 5.7660 10 1 2.0139 -4.5392 6.4906 11 6 0.2926 -3.3156 6.0820 12 7 -0.3702 -2.6548 5.1650 13 14 -0.3981 -3.4601 7.8115 14 1 0.5358 -4.2508 8.6529 15 1 -0.5614 -2.1040 8.3943 16 1 -1.7174 -4.1401 7.7625 17 6 3.3567 -4.1522 4.1688 18 16 3.7027 -3.6976 2.5570 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1263 -0.6443 1.2951 27 1 1.6054 -0.2617 2.1370 28 1 0.5490 -2.2723 1.1421 29 1 2.0699 -2.6550 0.3002 30 1 -1.2194 -2.2403 5.3844 31 1 4.0140 -4.7102 4.8190 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061798233.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:54 Heat of formation + Delta-G solvation = 5.618772 kcal Electronic energy + Delta-G solvation = -13184.815349 eV Core-core repulsion = 10977.721046 eV Total energy + Delta-G solvation = -2207.094303 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.90463 -36.48957 -33.26707 -31.32931 -28.31776 -26.98852 -25.56066 -24.19150 -21.10874 -19.69724 -18.54349 -17.59785 -15.20440 -15.09016 -14.99549 -14.14443 -13.83071 -13.34435 -12.86270 -12.63829 -12.35755 -12.03910 -11.55846 -11.50401 -11.37064 -11.19571 -10.91579 -10.71206 -10.53700 -10.38932 -10.26411 -10.08354 -9.63745 -9.23118 -7.95344 -7.90518 -7.27126 -6.51284 -4.32161 2.35681 2.99758 3.05806 3.11380 3.16776 3.73469 4.03274 4.32246 5.00212 5.11360 5.16340 5.45960 5.53520 5.72406 5.77657 5.89478 5.93860 5.97392 6.05850 6.20632 6.32403 6.37553 6.43719 6.72437 6.74615 6.93387 7.14967 7.29832 7.57139 8.23559 8.58908 8.92346 9.66031 10.36414 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.026106 B = 0.008237 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.295611 B = 3398.565026 C = 4233.487153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.106 4.106 5 C -0.031 4.031 6 C 0.063 3.937 7 N -0.398 5.398 8 C 0.225 3.775 9 C -0.434 4.434 10 H 0.083 0.917 11 C 0.072 3.928 12 N -0.751 5.751 13 Si 0.910 3.090 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.457 4.457 18 S -0.054 6.054 19 H 0.059 0.941 20 H 0.055 0.945 21 H 0.047 0.953 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.272 0.728 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 5.147 -7.605 9.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.073 4.073 6 C -0.222 4.222 7 N -0.111 5.111 8 C 0.104 3.896 9 C -0.468 4.468 10 H 0.101 0.899 11 C -0.150 4.150 12 N -0.374 5.374 13 Si 0.734 3.266 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.199 1.199 17 C -0.595 4.595 18 S 0.194 5.806 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.688 5.323 -8.176 9.780 hybrid contribution -0.595 -0.318 1.823 1.944 sum 0.093 5.005 -6.353 8.088 Atomic orbital electron populations 1.21889 0.95302 1.02159 1.01254 1.21115 0.95972 0.95876 0.98401 1.21830 1.00805 0.96302 1.01389 1.21610 1.00769 0.94232 0.97865 1.20104 1.01576 0.93801 0.91815 1.27828 0.92825 1.02868 0.98629 1.67374 1.31013 1.14289 0.98470 1.18044 0.88042 0.90673 0.92882 1.18979 1.03511 1.27016 0.97280 0.89865 1.25986 0.96490 0.93794 0.98742 1.70130 1.11403 1.22910 1.32965 0.86240 0.79199 0.78827 0.82322 1.18510 1.19911 1.19945 1.25044 1.04918 1.29906 0.99658 1.82615 1.25225 1.58165 1.14625 0.92166 0.92540 0.93391 0.91456 0.92859 0.93128 0.92713 0.92053 0.91212 0.89618 0.91267 0.91716 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 2 C -0.10 -1.21 2.92 -90.62 -0.26 -1.47 16 3 C -0.15 -1.66 9.19 37.16 0.34 -1.31 16 4 C -0.11 -1.70 4.66 -26.73 -0.12 -1.83 16 5 C -0.03 -0.57 5.58 -27.88 -0.16 -0.72 16 6 C 0.06 1.47 6.82 -13.55 -0.09 1.37 16 7 N -0.40 -10.96 8.49 -8.36 -0.07 -11.03 16 8 C 0.23 6.47 6.46 -86.17 -0.56 5.92 16 9 C -0.43 -12.27 9.23 -37.92 -0.35 -12.62 16 10 H 0.08 2.25 7.85 -52.49 -0.41 1.84 16 11 C 0.07 1.91 5.48 -17.34 -0.10 1.81 16 12 N -0.75 -20.52 11.72 55.54 0.65 -19.87 16 13 Si 0.91 19.45 29.56 -169.99 -5.03 14.42 16 14 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 C -0.46 -12.12 10.98 30.53 0.34 -11.79 16 18 S -0.05 -1.22 23.16 -107.50 -2.49 -3.71 16 19 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.09 1.57 6.56 -51.93 -0.34 1.22 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.27 6.74 8.30 -40.82 -0.34 6.40 16 31 H 0.14 3.44 8.06 -52.49 -0.42 3.02 16 LS Contribution 275.14 15.07 4.15 4.15 Total: -1.00 -29.87 275.14 -7.87 -37.75 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.46 Total: 0.47 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -0.63 Total: -22.17 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.58 Total: -30.89 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.49 Total: -3.71 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.87 -7.87 -37.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798233.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.365 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds