Wall clock time and date at job start Mon Mar 30 2020 02:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33392 * 125.20394 * 2 1 4 4 C 1.38425 * 114.91989 * 179.74889 * 3 2 1 5 5 C 1.33383 * 114.91945 * 0.42757 * 4 3 2 6 6 C 1.50708 * 125.19807 * 179.85645 * 5 4 3 7 7 C 1.52997 * 109.46824 * 89.72722 * 6 5 4 8 8 H 1.09005 * 109.47159 * 54.99623 * 7 6 5 9 9 C 1.52999 * 109.47264 * 174.99622 * 7 6 5 10 10 N 1.46498 * 109.47167 * 294.99453 * 7 6 5 11 11 C 1.36935 * 120.00239 * 154.99975 * 10 7 6 12 12 H 1.08004 * 120.00069 * 0.02562 * 11 10 7 13 13 C 1.38811 * 120.00368 * 180.02562 * 11 10 7 14 14 N 1.31624 * 119.99540 * 359.72375 * 13 11 10 15 15 Si 1.86800 * 120.00451 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72253 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72375 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72186 * 15 13 11 19 19 S 1.75882 * 125.20295 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47287 * 300.00233 * 1 2 3 22 22 H 1.09003 * 109.46907 * 59.99678 * 1 2 3 23 23 H 1.07996 * 122.53829 * 359.97438 * 3 2 1 24 24 H 1.08001 * 122.53746 * 180.27417 * 4 3 2 25 25 H 1.08996 * 109.47484 * 329.72154 * 6 5 4 26 26 H 1.09001 * 109.46742 * 209.72108 * 6 5 4 27 27 H 1.08994 * 109.47214 * 179.97438 * 9 7 6 28 28 H 1.08994 * 109.47102 * 299.99987 * 9 7 6 29 29 H 1.09005 * 109.47033 * 59.99923 * 9 7 6 30 30 H 0.97004 * 119.99747 * 335.00715 * 10 7 6 31 31 H 0.97000 * 120.00481 * 0.27542 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8428 0.0055 5 6 3.9750 -0.4477 0.0009 6 6 5.3861 -0.9770 0.0022 7 6 5.8624 -1.1557 1.4452 8 1 5.1592 -1.7911 1.9838 9 6 7.2458 -1.8090 1.4484 10 7 5.9387 0.1527 2.0998 11 6 5.8339 0.2439 3.4621 12 1 5.6954 -0.6488 4.0540 13 6 5.9057 1.4836 4.0823 14 7 6.0800 2.5710 3.3614 15 14 5.7636 1.6080 5.9408 16 1 5.8778 3.0303 6.3519 17 1 4.4481 1.0716 6.3735 18 1 6.8517 0.8207 6.5742 19 16 2.5209 -1.4372 0.0006 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8669 2.0894 -0.0004 24 1 4.3721 1.6350 0.0105 25 1 6.0393 -0.2716 -0.5113 26 1 5.4140 -1.9381 -0.5112 27 1 7.5853 -1.9359 2.4764 28 1 7.1891 -2.7825 0.9614 29 1 7.9490 -1.1737 0.9098 30 1 6.0633 0.9544 1.5682 31 1 6.1542 2.5065 2.3964 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070633857.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:50 Heat of formation + Delta-G solvation = 9.365672 kcal Electronic energy + Delta-G solvation = -13358.757256 eV Core-core repulsion = 11151.825431 eV Total energy + Delta-G solvation = -2206.931826 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.27512 -37.63328 -34.80612 -32.85982 -30.53029 -29.16896 -25.87450 -25.35070 -23.58050 -21.75363 -19.96844 -19.23913 -17.76121 -16.65412 -16.28101 -16.01452 -15.46122 -14.90379 -14.50796 -14.10457 -13.98510 -13.80343 -13.39545 -13.02174 -12.90400 -12.63863 -12.42149 -12.37052 -12.14404 -11.89521 -11.79789 -11.66185 -11.20692 -10.93200 -9.33613 -9.26094 -9.03951 -8.33511 -5.25079 0.11192 0.73564 1.05918 1.55979 1.65931 1.81986 1.87290 2.72120 3.44610 3.74482 3.86955 4.00671 4.15156 4.40763 4.42559 4.48100 4.68651 4.74129 4.76567 4.83961 4.86492 4.97162 5.09509 5.22502 5.29712 5.43707 5.51020 5.62584 5.67625 6.55208 7.16114 8.06771 8.18452 9.18510 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.009064 C = 0.007512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.661510 B = 3088.533663 C = 3726.645889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.188 4.188 3 C -0.155 4.155 4 C -0.143 4.143 5 C -0.168 4.168 6 C -0.049 4.049 7 C 0.176 3.824 8 H 0.034 0.966 9 C -0.154 4.154 10 N -0.739 5.739 11 C -0.320 4.320 12 H 0.059 0.941 13 C -0.105 4.105 14 N -0.975 5.975 15 Si 1.122 2.878 16 H -0.293 1.293 17 H -0.282 1.282 18 H -0.279 1.279 19 S 0.094 5.906 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.143 0.857 24 H 0.116 0.884 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.359 0.641 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 -8.451 -8.824 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.305 4.305 3 C -0.185 4.185 4 C -0.173 4.173 5 C -0.285 4.285 6 C -0.089 4.089 7 C 0.067 3.933 8 H 0.052 0.948 9 C -0.214 4.214 10 N -0.382 5.382 11 C -0.452 4.452 12 H 0.077 0.923 13 C -0.296 4.296 14 N -0.624 5.624 15 Si 0.948 3.052 16 H -0.219 1.219 17 H -0.209 1.209 18 H -0.205 1.205 19 S 0.357 5.643 20 H 0.096 0.904 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.161 0.839 24 H 0.134 0.866 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.191 0.809 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.584 -9.177 -7.406 14.586 hybrid contribution 0.659 1.081 -1.291 1.808 sum -7.925 -8.096 -8.697 14.283 Atomic orbital electron populations 1.20400 0.85540 1.03720 1.03820 1.24809 1.01286 0.94940 1.09507 1.20161 0.92755 1.00132 1.05433 1.20069 0.96616 0.96212 1.04390 1.24441 0.99150 0.96399 1.08539 1.20480 0.89206 1.02087 0.97105 1.20380 0.94972 0.86787 0.91162 0.94785 1.22276 0.98030 1.00387 1.00726 1.42514 1.88440 1.03622 1.03598 1.20291 1.44851 0.94967 0.85096 0.92273 1.26990 1.01175 0.91274 1.10147 1.70979 1.55758 1.29579 1.06082 0.82694 0.76830 0.75381 0.70339 1.21929 1.20879 1.20507 1.83683 0.96312 1.09895 1.74373 0.90410 0.90259 0.88962 0.83926 0.86627 0.90304 0.88093 0.94684 0.90572 0.93478 0.80873 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.38 71.24 0.74 -0.84 16 2 C -0.19 -5.57 6.51 24.59 0.16 -5.41 16 3 C -0.15 -5.23 10.05 21.22 0.21 -5.01 16 4 C -0.14 -5.45 9.83 21.22 0.21 -5.24 16 5 C -0.17 -5.97 5.53 24.59 0.14 -5.83 16 6 C -0.05 -1.62 5.25 29.85 0.16 -1.46 16 7 C 0.18 7.08 2.88 44.99 0.13 7.21 16 8 H 0.03 1.46 8.08 -2.38 -0.02 1.44 16 9 C -0.15 -5.45 9.49 71.98 0.68 -4.77 16 10 N -0.74 -37.54 4.69 -322.94 -1.51 -39.05 16 11 C -0.32 -18.37 9.93 84.03 0.83 -17.53 16 12 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 13 C -0.10 -6.20 5.50 84.86 0.47 -5.73 16 14 N -0.98 -61.91 13.70 21.65 0.30 -61.61 16 15 Si 1.12 53.55 29.92 68.60 2.05 55.61 16 16 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 S 0.09 2.85 23.31 -56.49 -1.32 1.53 16 20 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 24 H 0.12 4.71 8.05 -2.91 -0.02 4.69 16 25 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.36 19.06 6.57 -92.71 -0.61 18.45 16 31 H 0.24 15.37 6.77 -92.71 -0.63 14.74 16 Total: -1.00 -67.53 278.78 3.88 -63.65 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.64 Total: 24.51 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 3.73 Total: -44.63 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -1.22 Total: -100.67 kcal Atomic # 14 Polarization: 53.55 SS G_CDS: 2.05 Total: 55.61 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.32 Total: 1.53 kcal Total: -67.53 3.88 -63.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070633857.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.015 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds