Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30682 * 123.22195 * 2 1 4 4 C 1.29525 * 117.62869 * 180.02562 * 3 2 1 5 5 C 1.50707 * 124.55694 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47372 * 60.00060 * 5 4 3 7 7 C 1.53000 * 109.46699 * 180.02562 * 5 4 3 8 8 C 1.52998 * 109.46766 * 299.99779 * 5 4 3 9 9 S 1.70877 * 110.87781 * 359.97438 * 4 3 2 10 10 C 1.38581 * 123.22720 * 180.02562 * 2 1 3 11 11 C 1.40038 * 126.25490 * 359.97438 * 10 2 1 12 12 H 1.08005 * 119.99897 * 0.02562 * 11 10 2 13 13 C 1.40070 * 120.00194 * 179.97438 * 11 10 2 14 14 N 1.30867 * 119.99980 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00283 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46842 * 60.00453 * 15 13 11 17 17 H 1.48500 * 109.47311 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47048 * 300.00590 * 15 13 11 19 19 H 1.09003 * 109.46696 * 269.99595 * 1 2 3 20 20 H 1.08997 * 109.47231 * 29.99519 * 1 2 3 21 21 H 1.09001 * 109.47204 * 150.00129 * 1 2 3 22 22 H 1.08996 * 109.47265 * 59.99474 * 6 5 4 23 23 H 1.08995 * 109.47133 * 180.02562 * 6 5 4 24 24 H 1.09005 * 109.46694 * 299.99750 * 6 5 4 25 25 H 1.08997 * 109.47241 * 59.99844 * 7 5 4 26 26 H 1.09004 * 109.46845 * 179.97438 * 7 5 4 27 27 H 1.08996 * 109.47314 * 299.99577 * 7 5 4 28 28 H 1.08997 * 109.47645 * 60.00427 * 8 5 4 29 29 H 1.09004 * 109.47001 * 180.02562 * 8 5 4 30 30 H 1.09005 * 109.47606 * 300.00234 * 8 5 4 31 31 H 0.97005 * 120.00125 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2230 1.0932 0.0000 4 6 3.5121 0.9670 -0.0005 5 6 4.4838 2.1189 0.0000 6 6 4.2618 2.9729 1.2498 7 6 5.9152 1.5785 -0.0015 8 6 4.2609 2.9746 -1.2487 9 16 3.9625 -0.6813 -0.0004 10 6 2.2664 -1.1592 -0.0005 11 6 1.7755 -2.4708 -0.0006 12 1 0.7102 -2.6487 -0.0007 13 6 2.6661 -3.5519 -0.0017 14 7 3.9569 -3.3364 -0.0021 15 14 2.0114 -5.3014 -0.0011 16 1 1.1810 -5.5195 -1.2128 17 1 3.1492 -6.2557 -0.0018 18 1 1.1836 -5.5197 1.2123 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3633 0.8900 -0.5137 21 1 -0.3634 -0.8900 -0.5138 22 1 4.4205 2.3633 2.1393 23 1 4.9644 3.8063 1.2499 24 1 3.2420 3.3579 1.2503 25 1 6.0730 0.9703 -0.8922 26 1 6.6181 2.4117 -0.0016 27 1 6.0743 0.9687 0.8877 28 1 3.2412 3.3595 -1.2481 29 1 4.9641 3.8075 -1.2486 30 1 4.4191 2.3661 -2.1392 31 1 4.5737 -4.0851 -0.0025 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082420617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = -9.406616 kcal Electronic energy + Delta-G solvation = -13579.765585 eV Core-core repulsion = 11372.019732 eV Total energy + Delta-G solvation = -2207.745853 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.91198 -35.79251 -33.96952 -30.02029 -27.88664 -26.69766 -26.56264 -24.11041 -22.79525 -18.77320 -18.48595 -16.77105 -15.55339 -15.18065 -14.08846 -13.74359 -13.28045 -12.85656 -12.83633 -12.03923 -11.91514 -11.74474 -11.56660 -11.53919 -11.51603 -11.06123 -10.93895 -10.79413 -10.57802 -10.23501 -10.20252 -10.11595 -9.69815 -9.15601 -7.74339 -7.67235 -6.98411 -6.97314 -4.51029 2.54298 2.89879 2.93530 3.07779 3.51578 3.66099 4.07971 4.27879 5.02878 5.43047 5.66650 5.72203 6.06819 6.17145 6.20358 6.39440 6.42452 6.47411 6.54024 6.64211 6.67493 6.74915 6.80095 6.85613 7.03766 7.04047 7.10365 7.40361 7.77654 7.99907 8.40778 8.42969 9.79782 9.88370 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.038586 B = 0.009442 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.473463 B = 2964.877420 C = 3493.991867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 C -0.154 4.154 3 N -0.427 5.427 4 C -0.164 4.164 5 C 0.039 3.961 6 C -0.126 4.126 7 C -0.141 4.141 8 C -0.126 4.126 9 S 0.126 5.874 10 C -0.004 4.004 11 C -0.372 4.372 12 H 0.096 0.904 13 C 0.049 3.951 14 N -0.777 5.777 15 Si 0.934 3.066 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.261 1.261 19 H 0.034 0.966 20 H 0.040 0.960 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 1.626 -0.050 2.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.288 4.288 3 N -0.139 5.139 4 C -0.434 4.434 5 C 0.035 3.965 6 C -0.184 4.184 7 C -0.199 4.199 8 C -0.184 4.184 9 S 0.380 5.620 10 C -0.128 4.128 11 C -0.409 4.409 12 H 0.114 0.886 13 C -0.172 4.172 14 N -0.404 5.404 15 Si 0.758 3.242 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.185 1.185 19 H 0.053 0.947 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.207 1.645 -0.050 3.605 hybrid contribution -1.181 -0.861 0.015 1.461 sum 2.026 0.784 -0.035 2.173 Atomic orbital electron populations 1.19607 0.90477 0.99663 0.99102 1.19879 0.95457 0.86394 1.27065 1.64921 1.05214 1.33299 1.10489 1.25745 0.93439 0.99195 1.25026 1.18519 0.91613 0.91507 0.94842 1.21758 1.01083 0.98219 0.97350 1.21853 0.95461 1.00283 1.02294 1.21760 1.01072 0.98216 0.97357 1.83955 1.07763 0.96693 1.73624 1.23118 0.94407 0.97088 0.98142 1.19116 0.95338 0.88554 1.37919 0.88583 1.26206 0.94533 1.03253 0.93224 1.69010 1.02956 1.35326 1.33109 0.85876 0.79343 0.78703 0.80284 1.18527 1.19865 1.18526 0.94679 0.94061 0.93229 0.93376 0.93932 0.92566 0.92465 0.93031 0.92465 0.92563 0.93939 0.93378 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.65 10.06 36.01 0.36 -0.29 16 2 C -0.15 -4.05 6.90 -82.96 -0.57 -4.62 16 3 N -0.43 -11.17 10.45 -7.08 -0.07 -11.24 16 4 C -0.16 -3.98 5.77 -13.25 -0.08 -4.06 16 5 C 0.04 0.77 0.99 -155.66 -0.15 0.61 16 6 C -0.13 -2.29 8.45 37.15 0.31 -1.97 16 7 C -0.14 -2.48 7.52 37.16 0.28 -2.20 16 8 C -0.13 -2.29 8.44 37.16 0.31 -1.97 16 9 S 0.13 3.18 18.57 -107.50 -2.00 1.18 16 10 C 0.00 -0.12 6.25 -38.78 -0.24 -0.36 16 11 C -0.37 -9.48 8.93 -38.22 -0.34 -9.82 16 12 H 0.10 2.30 6.94 -52.48 -0.36 1.93 16 13 C 0.05 1.16 5.50 -17.28 -0.09 1.06 16 14 N -0.78 -18.79 10.76 55.56 0.60 -18.19 16 15 Si 0.93 17.52 29.56 -169.99 -5.03 12.50 16 16 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 17 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 18 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 19 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.05 1.04 7.15 -51.93 -0.37 0.67 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 1.03 7.91 -51.93 -0.41 0.62 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.03 7.90 -51.93 -0.41 0.62 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.30 6.45 8.30 -40.82 -0.34 6.11 16 LS Contribution 270.94 15.07 4.08 4.08 Total: -1.00 -27.87 270.94 -7.12 -34.99 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.50 Total: 0.30 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -0.21 Total: -23.62 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 0.52 Total: -29.43 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.50 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.00 Total: 1.18 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.87 -7.12 -34.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082420617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.584 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds